Human Gene DBI (uc010yym.2)
  Description: Homo sapiens diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) (DBI), transcript variant 6, mRNA.
RefSeq Summary (NM_001178043): This gene encodes diazepam binding inhibitor, a protein that is regulated by hormones and is involved in lipid metabolism and the displacement of beta-carbolines and benzodiazepines, which modulate signal transduction at type A gamma-aminobutyric acid receptors located in brain synapses. The protein is conserved from yeast to mammals, with the most highly conserved domain consisting of seven contiguous residues that constitute the hydrophobic binding site for medium- and long-chain acyl-Coenzyme A esters. Diazepam binding inhibitor is also known to mediate the feedback regulation of pancreatic secretion and the postprandial release of cholecystokinin, in addition to its role as a mediator in corticotropin-dependent adrenal steroidogenesis. Three pseudogenes located on chromosomes 6, 8 and 16 have been identified. Multiple transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Jul 2008]. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments.
Transcript (Including UTRs)
   Position: hg19 chr2:120,124,553-120,130,122 Size: 5,570 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr2:120,124,628-120,129,894 Size: 5,267 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:120,124,553-120,130,122)mRNA (may differ from genome)Protein (97 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCLynxMalacardsMGIOMIMPubMed
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: B8ZWD1_HUMAN
DESCRIPTION: SubName: Full=Diazepam binding inhibitor, splice form 1A(2);
SIMILARITY: Contains 1 ACB (acyl-CoA-binding) domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): DBI
CDC HuGE Published Literature: DBI
Positive Disease Associations: anxiety disorder panic disorder
Related Studies:
  1. anxiety disorder panic disorder
    Thoeringer, C. K. et al. 2006, Association of a Met88Val diazepam binding inhibitor (DBI) gene polymorphism and anxiety disorders with panic attacks, J Psychiatr Res 2006. [PubMed 16904689]
    these results suggest a central role of DBI genetic variants in the susceptibility for the development of anxiety disorders that are characterized by the occurrence of panic attacks.

-  MalaCards Disease Associations
  MalaCards Gene Search: DBI
Diseases sorted by gene-association score: hepatic coma (13), abdominal obesity-metabolic syndrome (9), abdominal obesity-metabolic syndrome 1 (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 156.76 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 3100.72 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -20.3075-0.271 Picture PostScript Text
3' UTR -49.60228-0.218 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR022408 - Acyl-CoA-binding_prot_CS
IPR000582 - Acyl-CoA-binding_protein
IPR014352 - FERM/acyl-CoA-bd_prot_3-hlx

Pfam Domains:
PF00887 - Acyl CoA binding protein

SCOP Domains:
47027 - Acyl-CoA binding protein
47031 - Second domain of FERM

ModBase Predicted Comparative 3D Structure on B8ZWD1
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000062 fatty-acyl-CoA binding


-  Descriptions from all associated GenBank mRNAs
  LF205326 - JP 2014500723-A/12829: Polycomb-Associated Non-Coding RNAs.
FM213122 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1A(2) (DBI gene).
FM213123 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1A(2)-B(1) (DBI gene).
FM213124 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1A(2)-B(2) (DBI gene).
FM213125 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1A(1)-B(1) (DBI gene).
FM213126 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1A(1)-B(2) (DBI gene).
FM213128 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1A(1)-G (DBI gene).
FM213132 - Homo sapiens putative regulatory RNA transcript 1A(1)-D(2) (DBI gene).
DL491811 - Novel nucleic acids.
M15887 - Human endozepine (putative ligand of benzodiazepine receptor) mRNA, complete cds.
BC006466 - Homo sapiens diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein), mRNA (cDNA clone IMAGE:3510767).
DL490385 - Novel nucleic acids.
FM213129 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1D(1) (DBI gene).
FM213130 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1D(2) (DBI gene).
FM213131 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1D(1)-B(1) (DBI gene).
BC062996 - Homo sapiens diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein), mRNA (cDNA clone MGC:70414 IMAGE:5168729), complete cds.
FM213127 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1G (DBI gene).
M14200 - Human diazepam binding inhibitor (DBI) mRNA, complete cds.
HQ448654 - Synthetic construct Homo sapiens clone IMAGE:100072093; CCSB012108_01 diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) (DBI) gene, encodes complete protein.
KJ891030 - Synthetic construct Homo sapiens clone ccsbBroadEn_00424 DBI gene, encodes complete protein.
GQ891305 - Homo sapiens clone HEL-S-28a epididymis secretory sperm binding protein mRNA, complete cds.
AM000001 - Homo sapiens mRNA for diazepam binding inhibitor, splice form 1c (DBI gene).
CR456956 - Homo sapiens full open reading frame cDNA clone RZPDo834A0716D for gene DBI, diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein); complete cds, incl. stopcodon.
DL492217 - Novel nucleic acids.
FZ437621 - JP 2006507841-A/31: Functional and Hyperfunctional siRNA.
LF319337 - JP 2014500723-A/126840: Polycomb-Associated Non-Coding RNAs.
LF319333 - JP 2014500723-A/126836: Polycomb-Associated Non-Coding RNAs.
JD256928 - Sequence 237952 from Patent EP1572962.
MA440903 - JP 2018138019-A/12829: Polycomb-Associated Non-Coding RNAs.
MA554914 - JP 2018138019-A/126840: Polycomb-Associated Non-Coding RNAs.
MA554910 - JP 2018138019-A/126836: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa03320 - PPAR signaling pathway

-  Other Names for This Gene
  Alternate Gene Symbols: B8ZWD1, B8ZWD1_HUMAN, NM_001178043, NP_001171514
UCSC ID: uc010yym.2
RefSeq Accession: NM_001178043
Protein: B8ZWD1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001178043.1
exon count: 4CDS single in 3' UTR: no RNA size: 627
ORF size: 294CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 788.00frame shift in genome: no % Coverage: 95.22
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.