Human Gene STK16 (uc010zky.2)
Description: Homo sapiens serine/threonine kinase 16 (STK16), transcript variant 2, non-coding RNA.
Transcript (Including UTRs)
Position: hg19 chr2:220,110,201-220,112,548 Size: 2,348 Total Exon Count: 5 Strand: +
Coding Region
Position: hg19 chr2:220,110,722-220,112,338 Size: 1,617 Coding Exon Count: 4
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
MalaCards Disease Associations
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR008271 - Ser/Thr_kinase_AS
Pfam Domains: PF00069 - Protein kinase domain
PF07714 - Protein tyrosine kinase
SCOP Domains: 56112 - Protein kinase-like (PK-like)
ModBase Predicted Comparative 3D Structure on B4DXY6
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AK292694 - Homo sapiens cDNA FLJ75960 complete cds, highly similar to Homo sapiens serine/threonine kinase 16 (STK16), transcript variant 2, mRNA.AK310793 - Homo sapiens cDNA, FLJ17835.AK298471 - Homo sapiens cDNA FLJ60771 complete cds, highly similar to Serine/threonine-protein kinase 16 (EC 2.7.11.1).AK225526 - Homo sapiens mRNA for serine/threonine kinase 16 variant, clone: KAT06371.AF060798 - Homo sapiens myristilated and palmitylated serine-threonine kinase MPSK (MPSK1) mRNA, complete cds.BC002618 - Homo sapiens serine/threonine kinase 16, mRNA (cDNA clone MGC:1953 IMAGE:3143105), complete cds.AF203910 - Homo sapiens serine/threonine kinase KRCT mRNA, complete cds.AK225392 - Homo sapiens mRNA for serine/threonine kinase 16 variant, clone: HRC05788.BC053998 - Homo sapiens serine/threonine kinase 16, mRNA (cDNA clone MGC:61516 IMAGE:5760866), complete cds.AK096954 - Homo sapiens cDNA FLJ39635 fis, clone SMINT2002882, highly similar to Homo sapiens mRNA for F5-2.AK302182 - Homo sapiens cDNA FLJ60057 complete cds, highly similar to Serine/threonine-protein kinase 16 (EC 2.7.11.1).AJ005791 - Homo sapiens mRNA for PKL12 protein.AB020739 - Homo sapiens mRNA for F5-2, complete cds.AJ010872 - Homo sapiens mRNA for serine/threonine kinase.CR407675 - Homo sapiens full open reading frame cDNA clone RZPDo834C043D for gene STK16, serine/threonine kinase 16 complete cds, without stopcodon.CU691068 - Synthetic construct Homo sapiens gateway clone IMAGE:100021661 5' read STK16 mRNA.EU832072 - Synthetic construct Homo sapiens clone HAIB:100067101; DKFZo004G0824 serine/threonine kinase 16 protein (STK16) gene, encodes complete protein.KJ892568 - Synthetic construct Homo sapiens clone ccsbBroadEn_01962 STK16 gene, encodes complete protein.KJ897874 - Synthetic construct Homo sapiens clone ccsbBroadEn_07268 STK16 gene, encodes complete protein.KJ905358 - Synthetic construct Homo sapiens clone ccsbBroadEn_14907 STK16 gene, encodes complete protein.EU831979 - Synthetic construct Homo sapiens clone HAIB:100067008; DKFZo008G0823 serine/threonine kinase 16 protein (STK16) gene, encodes complete protein.BT019585 - Homo sapiens serine/threonine kinase 16 mRNA, complete cds.
Other Names for This Gene
Alternate Gene Symbols: AK302182, B4DXY6, B4DXY6_HUMAN, NM_001008910, NP_001008910UCSC ID: uc010zky.2RefSeq Accession: NM_001008910
Protein: B4DXY6
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
AK302182.1
exon count:
5 CDS single in 3' UTR:
no
RNA size:
1243
ORF size:
642 CDS single in intron:
no
Alignment % ID:
99.92
txCdsPredict score:
1124.00 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
yes
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
291 # strange splices:
0
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Methods, Credits, and Use Restrictions
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