Human Gene C3orf20 (uc011avj.2)
Description: Homo sapiens chromosome 3 open reading frame 20 (C3orf20), transcript variant 3, mRNA.Transcript (Including UTRs) Position: hg19 chr3:14,798,869-14,814,543 Size: 15,675 Total Exon Count: 5 Strand: +Coding Region Position: hg19 chr3:14,798,957-14,814,382 Size: 15,426 Coding Exon Count: 5
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Genetic Association Studies of Complex Diseases and Disorders
Genetic Association Database (archive): C3orf20
CDC HuGE Published Literature: C3orf20
Positive Disease Associations: Parkinson Disease
Related Studies: Parkinson Disease 0 ]
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog Gene Details Gene Sorter
Descriptions from all associated GenBank mRNAs
BC030599 - Homo sapiens chromosome 3 open reading frame 20, mRNA (cDNA clone MGC:26771 IMAGE:4831210), complete cds.AK131481 - Homo sapiens cDNA FLJ16655 fis, clone TESTI4038721.AL834386 - Homo sapiens mRNA; cDNA DKFZp434I172 (from clone DKFZp434I172).AL136781 - Homo sapiens mRNA; cDNA DKFZp434N1817 (from clone DKFZp434N1817).BC038406 - Homo sapiens chromosome 3 open reading frame 20, mRNA (cDNA clone MGC:35115 IMAGE:5167835), complete cds.AM392830 - Synthetic construct Homo sapiens clone IMAGE:100002510 for hypothetical protein (C3orf20 gene).AM392982 - Synthetic construct Homo sapiens clone IMAGE:100001963 for hypothetical protein (C3orf20 gene).AM393237 - Synthetic construct Homo sapiens clone IMAGE:100001997 for hypothetical protein (C3orf20 gene).KJ894931 - Synthetic construct Homo sapiens clone ccsbBroadEn_04325 C3orf20 gene, encodes complete protein.JD261833 - Sequence 242857 from Patent EP1572962.JD387538 - Sequence 368562 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: CU691563, NM_001184958, NP_001171887UCSC ID: uc011avj.2RefSeq Accession: NM_001184958
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
CU691563.1
exon count:
5 CDS single in 3' UTR:
no
RNA size:
1106 ORF size:
696 CDS single in intron:
no
Alignment % ID:
98.85 txCdsPredict score:
1459.00 frame shift in genome:
no
% Coverage:
70.61 has start codon:
yes
stop codon in genome:
no
# of Alignments:
1 has end codon:
yes
retained intron:
no
# AT/AC introns
0 selenocysteine:
no
end bleed into intron:
9 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.
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