Human Gene FAM53C (uc011cyq.2)
  Description: Homo sapiens family with sequence similarity 53, member C (FAM53C), transcript variant 2, mRNA.
RefSeq Summary (NM_016605): The protein encoded by this gene belongs to the FAM53 protein family. FAM53 protein family members bind to a transcriptional regulator that modulates cell proliferation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2017].
Transcript (Including UTRs)
   Position: hg19 chr5:137,673,704-137,685,418 Size: 11,715 Total Exon Count: 5 Strand: +


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:137,673,704-137,685,418)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblExonPrimerGeneNetworkH-INVHGNC
LynxPubMedTreefam

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 45.91 RPKM in Testis
Total median expression: 622.55 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC052993 - Homo sapiens family with sequence similarity 53, member C, mRNA (cDNA clone MGC:60317 IMAGE:5164799), complete cds.
AK026729 - Homo sapiens cDNA: FLJ23076 fis, clone LNG05834.
AK315567 - Homo sapiens cDNA, FLJ96639.
AK310378 - Homo sapiens cDNA, FLJ17420.
AK027412 - Homo sapiens cDNA FLJ14506 fis, clone NT2RM1000365.
BC000259 - Homo sapiens family with sequence similarity 53, member C, mRNA (cDNA clone MGC:821 IMAGE:3357346), complete cds.
AF251040 - Homo sapiens putative nuclear protein (STSG4523) mRNA, complete cds.
JD406995 - Sequence 388019 from Patent EP1572962.
JD174043 - Sequence 155067 from Patent EP1572962.
JD200066 - Sequence 181090 from Patent EP1572962.
JD424756 - Sequence 405780 from Patent EP1572962.
CU674112 - Synthetic construct Homo sapiens gateway clone IMAGE:100018203 5' read FAM53C mRNA.
HQ447931 - Synthetic construct Homo sapiens clone IMAGE:100071292; CCSB003394_03 family with sequence similarity 53, member C (FAM53C) gene, encodes complete protein.
KJ893884 - Synthetic construct Homo sapiens clone ccsbBroadEn_03278 FAM53C gene, encodes complete protein.
JD037419 - Sequence 18443 from Patent EP1572962.
JD480321 - Sequence 461345 from Patent EP1572962.
JD484714 - Sequence 465738 from Patent EP1572962.
JD443736 - Sequence 424760 from Patent EP1572962.
JD194323 - Sequence 175347 from Patent EP1572962.
JD464073 - Sequence 445097 from Patent EP1572962.
JD276409 - Sequence 257433 from Patent EP1572962.
JD542149 - Sequence 523173 from Patent EP1572962.
JD181243 - Sequence 162267 from Patent EP1572962.
JD115373 - Sequence 96397 from Patent EP1572962.
JD442234 - Sequence 423258 from Patent EP1572962.
JD060166 - Sequence 41190 from Patent EP1572962.
JD488699 - Sequence 469723 from Patent EP1572962.
JD469022 - Sequence 450046 from Patent EP1572962.
JD170288 - Sequence 151312 from Patent EP1572962.
JD508700 - Sequence 489724 from Patent EP1572962.
JD556543 - Sequence 537567 from Patent EP1572962.
JD115860 - Sequence 96884 from Patent EP1572962.
JD439916 - Sequence 420940 from Patent EP1572962.
JD056051 - Sequence 37075 from Patent EP1572962.
JD300000 - Sequence 281024 from Patent EP1572962.
JD055643 - Sequence 36667 from Patent EP1572962.
JD260970 - Sequence 241994 from Patent EP1572962.
JD333804 - Sequence 314828 from Patent EP1572962.
JD103316 - Sequence 84340 from Patent EP1572962.
JD067895 - Sequence 48919 from Patent EP1572962.
JD424479 - Sequence 405503 from Patent EP1572962.
JD565322 - Sequence 546346 from Patent EP1572962.
JD420841 - Sequence 401865 from Patent EP1572962.
JD045214 - Sequence 26238 from Patent EP1572962.
JD372025 - Sequence 353049 from Patent EP1572962.
JD155018 - Sequence 136042 from Patent EP1572962.
JD377399 - Sequence 358423 from Patent EP1572962.
JD355389 - Sequence 336413 from Patent EP1572962.
JD188483 - Sequence 169507 from Patent EP1572962.
JD221182 - Sequence 202206 from Patent EP1572962.
JD438779 - Sequence 419803 from Patent EP1572962.
JD103746 - Sequence 84770 from Patent EP1572962.
JD244153 - Sequence 225177 from Patent EP1572962.
JD210788 - Sequence 191812 from Patent EP1572962.
JD022042 - Sequence 3066 from Patent EP1572962.
JD150388 - Sequence 131412 from Patent EP1572962.
JD347887 - Sequence 328911 from Patent EP1572962.
JD029902 - Sequence 10926 from Patent EP1572962.
JD047439 - Sequence 28463 from Patent EP1572962.
JD352317 - Sequence 333341 from Patent EP1572962.
JD288624 - Sequence 269648 from Patent EP1572962.
JD250420 - Sequence 231444 from Patent EP1572962.
JD221951 - Sequence 202975 from Patent EP1572962.
JD426182 - Sequence 407206 from Patent EP1572962.
JD356133 - Sequence 337157 from Patent EP1572962.
JD422593 - Sequence 403617 from Patent EP1572962.
JD235559 - Sequence 216583 from Patent EP1572962.
JD228025 - Sequence 209049 from Patent EP1572962.
JD061036 - Sequence 42060 from Patent EP1572962.
JD236694 - Sequence 217718 from Patent EP1572962.
JD507756 - Sequence 488780 from Patent EP1572962.
JD279934 - Sequence 260958 from Patent EP1572962.
JD381883 - Sequence 362907 from Patent EP1572962.
JD315746 - Sequence 296770 from Patent EP1572962.
JD467478 - Sequence 448502 from Patent EP1572962.
JD280858 - Sequence 261882 from Patent EP1572962.
JD466825 - Sequence 447849 from Patent EP1572962.
JD266600 - Sequence 247624 from Patent EP1572962.
JD344598 - Sequence 325622 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK310378
UCSC ID: uc011cyq.2
RefSeq Accession: NM_016605

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: AK310378.1
exon count: 5CDS single in 3' UTR: no RNA size: 923
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 584.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.