Human Gene ZCWPW1 (uc011kjq.2)
Description: Homo sapiens zinc finger, CW type with PWWP domain 1 (ZCWPW1), transcript variant 1, mRNA.
Transcript (Including UTRs)
Position: hg19 chr7:99,998,495-100,014,806 Size: 16,312 Total Exon Count: 13 Strand: -
Coding Region
Position: hg19 chr7:99,998,637-100,014,804 Size: 16,168 Coding Exon Count: 13
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR000313 - PWWP
IPR011124 - Znf_CW
Pfam Domains: PF00855 - PWWP domain
PF07496 - CW-type Zinc Finger
SCOP Domains: 63748 - Tudor/PWWP/MBT
ModBase Predicted Comparative 3D Structure on B4DXS7
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
BC002725 - Homo sapiens zinc finger, CW type with PWWP domain 1, mRNA (cDNA clone MGC:3436 IMAGE:3631266), complete cds.AL136735 - Homo sapiens mRNA; cDNA DKFZp434N0510 (from clone DKFZp434N0510).AK000919 - Homo sapiens cDNA FLJ10057 fis, clone HEMBA1001388.AK093038 - Homo sapiens cDNA FLJ35719 fis, clone TESTI2000683.AX747875 - Sequence 1400 from Patent EP1308459.AK302108 - Homo sapiens cDNA FLJ57660 complete cds, highly similar to Homo sapiens zinc finger, CW type with PWWP domain 1 (ZCWPW1), mRNA.AK300745 - Homo sapiens cDNA FLJ60897 complete cds, highly similar to Zinc finger CW-type PWWP domain protein 1.KJ902754 - Synthetic construct Homo sapiens clone ccsbBroadEn_12148 ZCWPW1 gene, encodes complete protein.KU178677 - Homo sapiens zinc finger CW type with PWWP domain 1 isoform 1 (ZCWPW1) mRNA, partial cds, alternatively spliced.KU178678 - Homo sapiens zinc finger CW type with PWWP domain 1 isoform 2 (ZCWPW1) mRNA, partial cds, alternatively spliced.KU178679 - Homo sapiens zinc finger CW type with PWWP domain 1 isoform 3 (ZCWPW1) mRNA, partial cds, alternatively spliced.KU178680 - Homo sapiens zinc finger CW type with PWWP domain 1 isoform 4 (ZCWPW1) mRNA, complete cds, alternatively spliced.KU178681 - Homo sapiens zinc finger CW type with PWWP domain 1 isoform 5 (ZCWPW1) mRNA, complete cds, alternatively spliced.KU178682 - Homo sapiens zinc finger CW type with PWWP domain 1 isoform 6 (ZCWPW1) mRNA, complete cds, alternatively spliced.CU678150 - Synthetic construct Homo sapiens gateway clone IMAGE:100019584 5' read ZCWPW1 mRNA.JD484869 - Sequence 465893 from Patent EP1572962.JD544110 - Sequence 525134 from Patent EP1572962.JD519576 - Sequence 500600 from Patent EP1572962.JD464731 - Sequence 445755 from Patent EP1572962.JD345750 - Sequence 326774 from Patent EP1572962.JD138719 - Sequence 119743 from Patent EP1572962.JD065192 - Sequence 46216 from Patent EP1572962.JD090956 - Sequence 71980 from Patent EP1572962.JD333509 - Sequence 314533 from Patent EP1572962.JD203498 - Sequence 184522 from Patent EP1572962.JD392434 - Sequence 373458 from Patent EP1572962.JD214381 - Sequence 195405 from Patent EP1572962.JD477337 - Sequence 458361 from Patent EP1572962.JD064763 - Sequence 45787 from Patent EP1572962.JD469951 - Sequence 450975 from Patent EP1572962.JD201812 - Sequence 182836 from Patent EP1572962.JD213934 - Sequence 194958 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: AK302108, B4DXS7, B4DXS7_HUMAN, NM_017984, NP_060454UCSC ID: uc011kjq.2RefSeq Accession: NM_017984
Protein: B4DXS7
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
AK302108.1
exon count:
13 CDS single in 3' UTR:
no
RNA size:
2202
ORF size:
1587 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
3293.00 frame shift in genome:
no
% Coverage:
77.25
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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