Human Gene TCAF2 (uc011ktk.2)
Description: Homo sapiens family with sequence similarity 115, member C (TCAF2), transcript variant 1, mRNA.
Transcript (Including UTRs)
Position: hg19 chr7:143,318,045-143,422,176 Size: 104,132 Total Exon Count: 7 Strand: +
Coding Region
Position: hg19 chr7:143,320,869-143,421,823 Size: 100,955 Coding Exon Count: 6
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
Pfam Domains: PF13402 - Peptidase M60, enhancin and enhancin-like
PF17291 - N-terminal domain of M60-like peptidases
ModBase Predicted Comparative 3D Structure on A6NFQ2-2
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
AK098041 - Homo sapiens cDNA FLJ40722 fis, clone THYMU2028629.AL832734 - Homo sapiens mRNA; cDNA DKFZp686F2013 (from clone DKFZp686F2013).BC113530 - Homo sapiens family with sequence similarity 115, member C, mRNA (cDNA clone MGC:142090 IMAGE:8322582), complete cds.BC117233 - Homo sapiens family with sequence similarity 115, member C, mRNA (cDNA clone MGC:150842 IMAGE:40125784), complete cds.AY167570 - Homo sapiens unknown mRNA.BC041464 - Homo sapiens, clone IMAGE:5213333, mRNA.AK315909 - Homo sapiens cDNA, FLJ78808 complete cds, highly similar to Mus musculus experimental autoimmune prostatitis antigen 2 (Eapa2), mRNA.AK297123 - Homo sapiens cDNA FLJ58905 complete cds, moderately similar to Mus musculus experimental autoimmune prostatitis antigen 2 (Eapa2), mRNA.BC033189 - Homo sapiens cDNA clone IMAGE:4622649, partial cds.BC010225 - Homo sapiens hypothetical LOC154761, mRNA (cDNA clone IMAGE:4150153), with apparent retained intron.HQ258592 - Synthetic construct Homo sapiens clone IMAGE:100073128 family with sequence similarity 115, member C (FAM115C), transcript variant 1 (FAM115C) gene, encodes complete protein.HQ258634 - Synthetic construct Homo sapiens clone IMAGE:100073190 family with sequence similarity 115, member C (FAM115C), transcript variant 1 (FAM115C) gene, encodes complete protein.EU832016 - Synthetic construct Homo sapiens clone HAIB:100067045; DKFZo004B1024 family with sequence similarity 139, member A protein (FAM139A) gene, encodes complete protein.EU831922 - Synthetic construct Homo sapiens clone HAIB:100066951; DKFZo008B1023 family with sequence similarity 139, member A protein (FAM139A) gene, encodes complete protein.KJ906482 - Synthetic construct Homo sapiens clone ccsbBroadEn_16152 FAM115C gene, encodes complete protein.AK296318 - Homo sapiens cDNA FLJ57809 complete cds.AK090395 - Homo sapiens mRNA for FLJ00264 protein.JD305891 - Sequence 286915 from Patent EP1572962.JD099578 - Sequence 80602 from Patent EP1572962.JD322083 - Sequence 303107 from Patent EP1572962.JD399054 - Sequence 380078 from Patent EP1572962.JD151415 - Sequence 132439 from Patent EP1572962.JD324738 - Sequence 305762 from Patent EP1572962.JD364800 - Sequence 345824 from Patent EP1572962.JD524509 - Sequence 505533 from Patent EP1572962.JD302656 - Sequence 283680 from Patent EP1572962.JD053176 - Sequence 34200 from Patent EP1572962.JD126873 - Sequence 107897 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: A6NFQ2-2, AL832734, FAM115C, FAM139A, NM_173678, NP_775949UCSC ID: uc011ktk.2RefSeq Accession: NM_173678
Protein: A6NFQ2-2 , splice isoform of A6NFQ2
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
AL832734.1
exon count:
7 CDS single in 3' UTR:
no
RNA size:
2980
ORF size:
2538 CDS single in intron:
no
Alignment % ID:
99.86
txCdsPredict score:
5276.00 frame shift in genome:
no
% Coverage:
99.06
has start codon:
yes
stop codon in genome:
no
# of Alignments:
2
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
386 # strange splices:
0
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Methods, Credits, and Use Restrictions
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