Human Gene FAM115C (uc011ktl.1)
Description: Homo sapiens family with sequence similarity 115, member C (FAM115C), transcript variant 2, mRNA.
Transcript (Including UTRs)
Position: hg19 chr7:143,318,542-143,342,767 Size: 24,226 Total Exon Count: 3 Strand: +
Coding Region
Position: hg19 chr7:143,320,869-143,341,113 Size: 20,245 Coding Exon Count: 2
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
ModBase Predicted Comparative 3D Structure on B7Z9E4
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Descriptions from all associated GenBank mRNAs
AL832734 - Homo sapiens mRNA; cDNA DKFZp686F2013 (from clone DKFZp686F2013).BC113530 - Homo sapiens family with sequence similarity 115, member C, mRNA (cDNA clone MGC:142090 IMAGE:8322582), complete cds.BC117233 - Homo sapiens family with sequence similarity 115, member C, mRNA (cDNA clone MGC:150842 IMAGE:40125784), complete cds.AY167570 - Homo sapiens unknown mRNA.BC041464 - Homo sapiens, clone IMAGE:5213333, mRNA.AK315909 - Homo sapiens cDNA, FLJ78808 complete cds, highly similar to Mus musculus experimental autoimmune prostatitis antigen 2 (Eapa2), mRNA.AK297123 - Homo sapiens cDNA FLJ58905 complete cds, moderately similar to Mus musculus experimental autoimmune prostatitis antigen 2 (Eapa2), mRNA.BC033189 - Homo sapiens cDNA clone IMAGE:4622649, partial cds.BC010225 - Homo sapiens hypothetical LOC154761, mRNA (cDNA clone IMAGE:4150153), with apparent retained intron.AK124492 - Homo sapiens cDNA FLJ42501 fis, clone BRACE2037692.JD402116 - Sequence 383140 from Patent EP1572962.JD268201 - Sequence 249225 from Patent EP1572962.JD183227 - Sequence 164251 from Patent EP1572962.JD396837 - Sequence 377861 from Patent EP1572962.JD344595 - Sequence 325619 from Patent EP1572962.JD255057 - Sequence 236081 from Patent EP1572962.JD378490 - Sequence 359514 from Patent EP1572962.JD381832 - Sequence 362856 from Patent EP1572962.JD170906 - Sequence 151930 from Patent EP1572962.JD142953 - Sequence 123977 from Patent EP1572962.JD549786 - Sequence 530810 from Patent EP1572962.JD120695 - Sequence 101719 from Patent EP1572962.JD259219 - Sequence 240243 from Patent EP1572962.JD086121 - Sequence 67145 from Patent EP1572962.JD054306 - Sequence 35330 from Patent EP1572962.JD519214 - Sequence 500238 from Patent EP1572962.JD340224 - Sequence 321248 from Patent EP1572962.JD128722 - Sequence 109746 from Patent EP1572962.JD180441 - Sequence 161465 from Patent EP1572962.JD359740 - Sequence 340764 from Patent EP1572962.JD258109 - Sequence 239133 from Patent EP1572962.JD262462 - Sequence 243486 from Patent EP1572962.JD423810 - Sequence 404834 from Patent EP1572962.JD050558 - Sequence 31582 from Patent EP1572962.JD183682 - Sequence 164706 from Patent EP1572962.JD470585 - Sequence 451609 from Patent EP1572962.JD055422 - Sequence 36446 from Patent EP1572962.JD241352 - Sequence 222376 from Patent EP1572962.JD192287 - Sequence 173311 from Patent EP1572962.JD248344 - Sequence 229368 from Patent EP1572962.JD172386 - Sequence 153410 from Patent EP1572962.JD181639 - Sequence 162663 from Patent EP1572962.JD240548 - Sequence 221572 from Patent EP1572962.JD178422 - Sequence 159446 from Patent EP1572962.JD486161 - Sequence 467185 from Patent EP1572962.JD127886 - Sequence 108910 from Patent EP1572962.JD058701 - Sequence 39725 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: B7Z9E4, B7Z9E4_HUMAN, BC010225UCSC ID: uc011ktl.1RefSeq Accession: NM_173678
Protein: B7Z9E4
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
BC010225.1
exon count:
3 CDS single in 3' UTR:
no
RNA size:
2522
ORF size:
780 CDS single in intron:
no
Alignment % ID:
99.68
txCdsPredict score:
1760.00 frame shift in genome:
no
% Coverage:
99.05
has start codon:
yes
stop codon in genome:
no
# of Alignments:
2
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.