Description: Homo sapiens extracellular matrix protein 2, female organ and adipocyte specific (ECM2), transcript variant 1, mRNA. RefSeq Summary (NM_001393): ECM2 encodes extracellular matrix protein 2, so named because it shares extensive similarity with known extracelluar matrix proteins. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2010]. Transcript (Including UTRs) Position: hg19 chr9:95,257,594-95,298,374 Size: 40,781 Total Exon Count: 10 Strand: - Coding Region Position: hg19 chr9:95,258,597-95,285,148 Size: 26,552 Coding Exon Count: 9
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Pfam Domains: PF00093 - von Willebrand factor type C domain PF13306 - Leucine rich repeats (6 copies) PF13516 - Leucine Rich repeat PF13855 - Leucine rich repeat
SCOP Domains: 52047 - RNI-like 52058 - L domain-like 52075 - Outer arm dynein light chain 1
ModBase Predicted Comparative 3D Structure on O94769
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
BX537976 - Homo sapiens mRNA; cDNA DKFZp686O0186 (from clone DKFZp686O0186); complete cds. AB011792 - Homo sapiens mRNA for extracellular matrix protein, complete cds. AK303922 - Homo sapiens cDNA FLJ51183 complete cds, highly similar to Extracellular matrix protein 2 precursor. AK298278 - Homo sapiens cDNA FLJ51022 complete cds, highly similar to Extracellular matrix protein 2 precursor. AK296458 - Homo sapiens cDNA FLJ51676 complete cds, highly similar to Extracellular matrix protein 2 precursor. AK312820 - Homo sapiens cDNA, FLJ93257, Homo sapiens extracellular matrix protein 2, female organ andadipocyte specific (ECM2), mRNA. AB527312 - Synthetic construct DNA, clone: pF1KE0009, Homo sapiens ECM2 gene for extracellular matrix protein 2, female organ and adipocyte specific, without stop codon, in Flexi system. AM393123 - Synthetic construct Homo sapiens clone IMAGE:100001929 for hypothetical protein (ECM2 gene). JD545746 - Sequence 526770 from Patent EP1572962. AK308485 - Homo sapiens cDNA, FLJ98526. BC105958 - Homo sapiens extracellular matrix protein 2, female organ and adipocyte specific, mRNA (cDNA clone MGC:126355 IMAGE:40035034), complete cds. BC107493 - Homo sapiens extracellular matrix protein 2, female organ and adipocyte specific, mRNA (cDNA clone MGC:126356 IMAGE:40035036), complete cds. JD313548 - Sequence 294572 from Patent EP1572962. JD341132 - Sequence 322156 from Patent EP1572962. JD434754 - Sequence 415778 from Patent EP1572962. JD038130 - Sequence 19154 from Patent EP1572962. JD486688 - Sequence 467712 from Patent EP1572962. JD284054 - Sequence 265078 from Patent EP1572962. JD291353 - Sequence 272377 from Patent EP1572962. BC036806 - Homo sapiens extracellular matrix protein 2, female organ and adipocyte specific, mRNA (cDNA clone IMAGE:5725929), partial cds.
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