Human Gene SLC25A14 (uc011mut.2)
  Description: Homo sapiens solute carrier family 25 (mitochondrial carrier, brain), member 14 (SLC25A14), nuclear gene encoding mitochondrial protein, transcript variant short, mRNA.
Transcript (Including UTRs)
   Position: hg19 chrX:129,473,928-129,499,650 Size: 25,723 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chrX:129,479,186-129,498,663 Size: 19,478 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:129,473,928-129,499,650)mRNA (may differ from genome)Protein (154 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblExonPrimerGeneCardsGeneNetwork
HGNCLynxMGIPubMedUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: B7Z996_HUMAN
DESCRIPTION: SubName: Full=cDNA FLJ54254, highly similar to Brain mitochondrial carrier protein 1;
SIMILARITY: Belongs to the mitochondrial carrier family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): SLC25A14
CDC HuGE Published Literature: SLC25A14
Positive Disease Associations: schizophrenia
Related Studies:
  1. schizophrenia
    Yasuno, K. et al. 2006, Synergistic association of mitochondrial uncoupling protein (UCP) genes with schizophrenia, Am J Med Genet B Neuropsychiatr Genet 2006. [PubMed 17066476]

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.02 RPKM in Pituitary
Total median expression: 188.35 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -4.1053-0.077 Picture PostScript Text
3' UTR -269.24987-0.273 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018108 - Mitochondrial_sb/sol_carrier
IPR023395 - Mt_carrier_dom

Pfam Domains:
PF00153 - Mitochondrial carrier protein

SCOP Domains:
103506 - Mitochondrial carrier

ModBase Predicted Comparative 3D Structure on B7Z996
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0006839 mitochondrial transport

Cellular Component:
GO:0005743 mitochondrial inner membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AK304649 - Homo sapiens cDNA FLJ54254 complete cds, highly similar to Brain mitochondrial carrier protein 1.
AK296155 - Homo sapiens cDNA FLJ60600 complete cds, highly similar to Brain mitochondrial carrier protein 1.
AF078544 - Homo sapiens brain mitochondrial carrier protein-1 (BMCP1) mRNA, nuclear gene encoding mitochondrial protein, complete cds.
BC119667 - Homo sapiens solute carrier family 25 (mitochondrial carrier, brain), member 14, mRNA (cDNA clone MGC:149544 IMAGE:40116118), complete cds.
BC119666 - Homo sapiens solute carrier family 25 (mitochondrial carrier, brain), member 14, mRNA (cDNA clone MGC:149543 IMAGE:40116117), complete cds.
KJ892669 - Synthetic construct Homo sapiens clone ccsbBroadEn_02063 SLC25A14 gene, encodes complete protein.
AF155809 - Homo sapiens mitochondrial uncoupling protein 5 long form mRNA, complete cds; nuclear gene for mitochondrial product.
AF155810 - Homo sapiens mitochondrial uncoupling protein 5 short form with insertion mRNA, complete cds; nuclear gene for mitochondrial product.
AF155811 - Homo sapiens mitochondrial uncoupling protein 5 short form mRNA, complete cds; nuclear gene for mitochondrial product.
AY358099 - Homo sapiens clone DNA80562 UCP5 (UNQ791) mRNA, complete cds.
AK297499 - Homo sapiens cDNA FLJ60702 complete cds, highly similar to Brain mitochondrial carrier protein 1.
AK309433 - Homo sapiens cDNA, FLJ99474.

-  Other Names for This Gene
  Alternate Gene Symbols: AK304649, B7Z996, B7Z996_HUMAN
UCSC ID: uc011mut.2
RefSeq Accession: NM_022810
Protein: B7Z996

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AK304649.1
exon count: 6CDS single in 3' UTR: no RNA size: 1372
ORF size: 465CDS single in intron: no Alignment % ID: 99.85
txCdsPredict score: 1107.00frame shift in genome: no % Coverage: 96.65
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.