Human Gene TMEM222 (uc021ojt.1)
  Description: Homo sapiens transmembrane protein 222 (TMEM222), transcript variant 4, non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr1:27,648,636-27,662,891 Size: 14,256 Total Exon Count: 8 Strand: +


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:27,648,636-27,662,891)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblExonPrimerH-INVHGNCLynx
PubMedWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 29.18 RPKM in Prostate
Total median expression: 882.52 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK313110 - Homo sapiens cDNA, FLJ93595.
AK303821 - Homo sapiens cDNA FLJ56305 complete cds.
AL136683 - Homo sapiens mRNA; cDNA DKFZp564D0478 (from clone DKFZp564D0478).
BC011579 - Homo sapiens transmembrane protein 222, mRNA (cDNA clone IMAGE:4548544), partial cds.
BC090039 - Homo sapiens transmembrane protein 222, mRNA (cDNA clone MGC:111002 IMAGE:6181849), complete cds.
EU831513 - Synthetic construct Homo sapiens clone HAIB:100066542; DKFZo004B0718 chromosome 1 open reading frame 160 protein (C1orf160) gene, encodes complete protein.
KJ904908 - Synthetic construct Homo sapiens clone ccsbBroadEn_14302 TMEM222 gene, encodes complete protein.
EU831420 - Synthetic construct Homo sapiens clone HAIB:100066449; DKFZo008B0717 chromosome 1 open reading frame 160 protein (C1orf160) gene, encodes complete protein.
AF251699 - Homo sapiens hypothetical protein SB71 mRNA, complete cds.
AK222642 - Homo sapiens mRNA for hypothetical protein DKFZp564D0478 variant, clone: CBL02969.
AK307077 - Homo sapiens cDNA, FLJ97025.
JD271282 - Sequence 252306 from Patent EP1572962.
AK123218 - Homo sapiens cDNA FLJ41224 fis, clone BRAMY2030098.
AK095889 - Homo sapiens cDNA FLJ38570 fis, clone HCHON2006722.
JD396340 - Sequence 377364 from Patent EP1572962.
JD210155 - Sequence 191179 from Patent EP1572962.
JD114748 - Sequence 95772 from Patent EP1572962.
JD102628 - Sequence 83652 from Patent EP1572962.
JD424797 - Sequence 405821 from Patent EP1572962.
JD338840 - Sequence 319864 from Patent EP1572962.
JD189300 - Sequence 170324 from Patent EP1572962.
JD173179 - Sequence 154203 from Patent EP1572962.
JD066153 - Sequence 47177 from Patent EP1572962.
JD432795 - Sequence 413819 from Patent EP1572962.
JD198676 - Sequence 179700 from Patent EP1572962.
JD109771 - Sequence 90795 from Patent EP1572962.
JD507122 - Sequence 488146 from Patent EP1572962.
JD104444 - Sequence 85468 from Patent EP1572962.
JD478836 - Sequence 459860 from Patent EP1572962.
JD222808 - Sequence 203832 from Patent EP1572962.
JD451044 - Sequence 432068 from Patent EP1572962.
JD371499 - Sequence 352523 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_037580
UCSC ID: uc021ojt.1
RefSeq Accession: NR_037580

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: NR_037580.1
exon count: 8CDS single in 3' UTR: no RNA size: 1870
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 383.00frame shift in genome: no % Coverage: 99.20
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.