Human Gene TCRA (uc021rqg.1)
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Sequence and Links to Tools and Databases
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Primer design for this transcript
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Comparative Toxicogenomics Database (CTD)
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The following chemicals interact with this gene
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Microarray Expression Data
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Press "+" in the title bar above to open this section.
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
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Descriptions from all associated GenBank mRNAs
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AB976939 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: N(2)-TRA12. KM004468 - Homo sapiens clone 443 T cell receptor alpha mRNA, partial cds. MG789391 - Homo sapiens isolate Sample1_Cell176_12H11_CDR3a T-cell receptor alpha chain mRNA, partial sequence. KX076903 - Homo sapiens isolate SG_Subject10 clone 1130-10 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076908 - Homo sapiens isolate SG_Subject10 clone 1135-10 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX077007 - Homo sapiens isolate SG_Subject10 clone 1234-10 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX077030 - Homo sapiens isolate SG_Subject10 clone 1257-10 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076875 - Homo sapiens isolate SG_Subject10 clone 1102-10 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. AB976800 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: CM(1)-TRA33. MG789622 - Homo sapiens isolate Sample1_Cell278_18C10_CDR3a T-cell receptor alpha chain mRNA, partial sequence. KM004893 - Homo sapiens clone 869 T cell receptor alpha mRNA, partial cds. KX074241 - Homo sapiens isolate PB_Subject1 clone 20-1 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. MG790347 - Homo sapiens isolate Sample3_Cell29_1C5_CDR3a T-cell receptor alpha chain mRNA, partial sequence. KX076769 - Homo sapiens isolate SG_Subject9 clone 996-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076246 - Homo sapiens isolate SG_Subject4 clone 473-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX074766 - Homo sapiens isolate PB_Subject4 clone 545-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. AB977460 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA194. MG789461 - Homo sapiens isolate Sample1_Cell210_14E9_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG790083 - Homo sapiens isolate Sample2_Cell158_2F8_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. KX075829 - Homo sapiens isolate SG_Subject1 clone 56-1 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX074224 - Homo sapiens isolate PB_Subject1 clone 3-1 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. MG790180 - Homo sapiens isolate Sample2_Cell203_3H5_CDR3a T-cell receptor alpha chain mRNA, partial sequence. KM004932 - Homo sapiens clone 908 T cell receptor alpha mRNA, partial cds. AB977464 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA198. KM004833 - Homo sapiens clone 809 T cell receptor alpha mRNA, partial cds. AB977435 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA169. MG789418 - Homo sapiens isolate Sample1_Cell188_13E2_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. AB977046 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: EEM(2)-TRA356. KX075720 - Homo sapiens isolate PB_Subject8 clone 1499-8 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX075660 - Homo sapiens isolate PB_Subject8 clone 1439-8 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. M97704 - Human T-cell receptor (V alpha 17.1 variant, J alpha IGRa05 variant, constant alpha 1) mRNA. AB977165 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: CM(3)-TRA34. KX075888 - Homo sapiens isolate SG_Subject2 clone 115-2 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX077058 - Homo sapiens isolate SG_Subject8 clone 1285-8 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX077085 - Homo sapiens isolate SG_Subject8 clone 1312-8 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. MG790607 - Homo sapiens isolate Sample3_Cell147_2E9_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG791038 - Homo sapiens isolate AA_Cell16_3B4_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG791060 - Homo sapiens isolate AA_Cell25_3C1_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. KX074678 - Homo sapiens isolate PB_Subject4 clone 457-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. MG791040 - Homo sapiens isolate AA_Cell17_3B5_CDR3a T-cell receptor alpha chain mRNA, partial sequence. KX074311 - Homo sapiens isolate PB_Subject1 clone 90-1 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076661 - Homo sapiens isolate SG_Subject9 clone 888-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. MG789094 - Homo sapiens isolate Sample1_Cell45_11D11_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG789764 - Homo sapiens isolate Sample2_Cell12_1A12_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG790547 - Homo sapiens isolate Sample3_Cell120_2C5_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG790753 - Homo sapiens isolate Sample3_Cell208_4C2_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. KX075014 - Homo sapiens isolate PB_Subject3 clone 793-3 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. MG790599 - Homo sapiens isolate Sample3_Cell144_2E6_CDR3a T-cell receptor alpha chain mRNA, partial sequence. AB749850 - Homo sapiens mRNA for T-cell receptor alpha chain, partial cds, clone: I_18_alpha. AB749878 - Homo sapiens mRNA for T-cell receptor alpha chain, partial cds, clone: Q_45_alpha. AB749880 - Homo sapiens mRNA for T-cell receptor alpha chain, partial cds, clone: Q_47_alpha. AB749894 - Homo sapiens mRNA for T-cell receptor alpha chain, partial cds, clone: T_45_alpha. AB749870 - Homo sapiens mRNA for T-cell receptor alpha chain, partial cds, clone: K_77_alpha. AB749866 - Homo sapiens mRNA for T-cell receptor alpha chain, partial cds, clone: K_04_alpha. KX077177 - Homo sapiens isolate SG_Subject8 clone 1404-8 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX076781 - Homo sapiens isolate SG_Subject9 clone 1008-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. AB977482 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA222. MG790562 - Homo sapiens isolate Sample3_Cell126_2C11_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. S56526 - Homo sapiens T cell receptor alpha chain variable mRNA, partial cds. U39113 - Homo sapiens T cell receptor alpha chain mRNA, partial cds. MG790080 - Homo sapiens isolate Sample2_Cell157_2F7_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. LP895916 - Sequence 780 from Patent EP3253886. MG789191 - Homo sapiens isolate Sample1_Cell86_11H11_CDR3a T-cell receptor alpha chain mRNA, partial sequence. AJ238415 - Homo sapiens mRNA for HIV-specific T-cell receptor alpha chain, clone MA, partial. X58752 - Human mRNA for T cell receptor J alpha gene segment IGRJa05. MG789032 - Homo sapiens isolate Sample1_Cell19_11B9_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG789843 - Homo sapiens isolate Sample2_Cell48_1D12_CDR3a T-cell receptor alpha chain mRNA, partial sequence. AJ238416 - Homo sapiens mRNA for HIV-specific T-cell receptor alpha chain, clone RI, partial. X68695 - H.sapiens mRNA for T-cell receptor alpha chain, J-alpha 17.5 segment. X60144 - Human J-alpha segment J-alpha FR8 mRNA for J-alpha region of T-cell receptor.
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Other Names for This Gene
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Alternate Gene Symbols: X68695 UCSC ID: uc021rqg.1 Representative RNA: X68695
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Gene Model Information
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category:
| noncoding
| nonsense-mediated-decay:
| no
| RNA accession:
| X68695.1
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exon count:
| 1 | CDS single in 3' UTR:
| no
| RNA size:
| 52 |
ORF size:
| 0 | CDS single in intron:
| no
| Alignment % ID:
| 100.00 |
txCdsPredict score:
| 0.00 | frame shift in genome:
| no
| % Coverage:
| 98.08 |
has start codon:
| no
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| no
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 0 | # strange splices:
| 0 |
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Click here
for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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