Human Gene TCRA (uc021rqg.1)
  Description: Homo sapiens mRNA for HIV-specific T-cell receptor alpha chain, clone MA, partial.
Transcript (Including UTRs)
   Position: hg19 chr14:22,974,099-22,974,153 Size: 55 Total Exon Count: 1 Strand: +


Page IndexSequence and LinksPrimersCTDMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:22,974,099-22,974,153)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
PubMedWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AB976939 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: N(2)-TRA12.
KM004468 - Homo sapiens clone 443 T cell receptor alpha mRNA, partial cds.
MG789391 - Homo sapiens isolate Sample1_Cell176_12H11_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
KX076903 - Homo sapiens isolate SG_Subject10 clone 1130-10 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
KX076908 - Homo sapiens isolate SG_Subject10 clone 1135-10 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
KX077007 - Homo sapiens isolate SG_Subject10 clone 1234-10 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
KX077030 - Homo sapiens isolate SG_Subject10 clone 1257-10 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
KX076875 - Homo sapiens isolate SG_Subject10 clone 1102-10 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
AB976800 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: CM(1)-TRA33.
MG789622 - Homo sapiens isolate Sample1_Cell278_18C10_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
KM004893 - Homo sapiens clone 869 T cell receptor alpha mRNA, partial cds.
KX074241 - Homo sapiens isolate PB_Subject1 clone 20-1 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
MG790347 - Homo sapiens isolate Sample3_Cell29_1C5_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
KX076769 - Homo sapiens isolate SG_Subject9 clone 996-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
KX076246 - Homo sapiens isolate SG_Subject4 clone 473-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
KX074766 - Homo sapiens isolate PB_Subject4 clone 545-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
AB977460 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA194.
MG789461 - Homo sapiens isolate Sample1_Cell210_14E9_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
MG790083 - Homo sapiens isolate Sample2_Cell158_2F8_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence.
KX075829 - Homo sapiens isolate SG_Subject1 clone 56-1 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
KX074224 - Homo sapiens isolate PB_Subject1 clone 3-1 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
MG790180 - Homo sapiens isolate Sample2_Cell203_3H5_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
KM004932 - Homo sapiens clone 908 T cell receptor alpha mRNA, partial cds.
AB977464 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA198.
KM004833 - Homo sapiens clone 809 T cell receptor alpha mRNA, partial cds.
AB977435 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA169.
MG789418 - Homo sapiens isolate Sample1_Cell188_13E2_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence.
AB977046 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: EEM(2)-TRA356.
KX075720 - Homo sapiens isolate PB_Subject8 clone 1499-8 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
KX075660 - Homo sapiens isolate PB_Subject8 clone 1439-8 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
M97704 - Human T-cell receptor (V alpha 17.1 variant, J alpha IGRa05 variant, constant alpha 1) mRNA.
AB977165 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: CM(3)-TRA34.
KX075888 - Homo sapiens isolate SG_Subject2 clone 115-2 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
KX077058 - Homo sapiens isolate SG_Subject8 clone 1285-8 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
KX077085 - Homo sapiens isolate SG_Subject8 clone 1312-8 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
MG790607 - Homo sapiens isolate Sample3_Cell147_2E9_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
MG791038 - Homo sapiens isolate AA_Cell16_3B4_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
MG791060 - Homo sapiens isolate AA_Cell25_3C1_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence.
KX074678 - Homo sapiens isolate PB_Subject4 clone 457-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
MG791040 - Homo sapiens isolate AA_Cell17_3B5_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
KX074311 - Homo sapiens isolate PB_Subject1 clone 90-1 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
KX076661 - Homo sapiens isolate SG_Subject9 clone 888-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
MG789094 - Homo sapiens isolate Sample1_Cell45_11D11_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
MG789764 - Homo sapiens isolate Sample2_Cell12_1A12_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
MG790547 - Homo sapiens isolate Sample3_Cell120_2C5_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence.
MG790753 - Homo sapiens isolate Sample3_Cell208_4C2_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence.
KX075014 - Homo sapiens isolate PB_Subject3 clone 793-3 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
MG790599 - Homo sapiens isolate Sample3_Cell144_2E6_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
AB749850 - Homo sapiens mRNA for T-cell receptor alpha chain, partial cds, clone: I_18_alpha.
AB749878 - Homo sapiens mRNA for T-cell receptor alpha chain, partial cds, clone: Q_45_alpha.
AB749880 - Homo sapiens mRNA for T-cell receptor alpha chain, partial cds, clone: Q_47_alpha.
AB749894 - Homo sapiens mRNA for T-cell receptor alpha chain, partial cds, clone: T_45_alpha.
AB749870 - Homo sapiens mRNA for T-cell receptor alpha chain, partial cds, clone: K_77_alpha.
AB749866 - Homo sapiens mRNA for T-cell receptor alpha chain, partial cds, clone: K_04_alpha.
KX077177 - Homo sapiens isolate SG_Subject8 clone 1404-8 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
KX076781 - Homo sapiens isolate SG_Subject9 clone 1008-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
AB977482 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA222.
MG790562 - Homo sapiens isolate Sample3_Cell126_2C11_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence.
S56526 - Homo sapiens T cell receptor alpha chain variable mRNA, partial cds.
U39113 - Homo sapiens T cell receptor alpha chain mRNA, partial cds.
MG790080 - Homo sapiens isolate Sample2_Cell157_2F7_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence.
LP895916 - Sequence 780 from Patent EP3253886.
MG789191 - Homo sapiens isolate Sample1_Cell86_11H11_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
AJ238415 - Homo sapiens mRNA for HIV-specific T-cell receptor alpha chain, clone MA, partial.
X58752 - Human mRNA for T cell receptor J alpha gene segment IGRJa05.
MG789032 - Homo sapiens isolate Sample1_Cell19_11B9_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
MG789843 - Homo sapiens isolate Sample2_Cell48_1D12_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
AJ238416 - Homo sapiens mRNA for HIV-specific T-cell receptor alpha chain, clone RI, partial.
X68695 - H.sapiens mRNA for T-cell receptor alpha chain, J-alpha 17.5 segment.
X60144 - Human J-alpha segment J-alpha FR8 mRNA for J-alpha region of T-cell receptor.

-  Other Names for This Gene
  Alternate Gene Symbols: X68695
UCSC ID: uc021rqg.1
Representative RNA: X68695

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: X68695.1
exon count: 1CDS single in 3' UTR: no RNA size: 52
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 0.00frame shift in genome: no % Coverage: 98.08
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.