Human Gene TRAJ12 (uc021rqn.1)
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Sequence and Links to Tools and Databases
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Primer design for this transcript
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
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Microarray Expression Data
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
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Descriptions from all associated GenBank mRNAs
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MG789408 - Homo sapiens isolate Sample1_Cell183_13B8_CDR3a T-cell receptor alpha chain mRNA, partial sequence. AB976743 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: N(1)-TRA62. KM004308 - Homo sapiens clone 283 T cell receptor beta mRNA, partial cds. MG790160 - Homo sapiens isolate Sample2_Cell193_3C12_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG790894 - Homo sapiens isolate Sample3_Cell272_8A3_CDR3a T-cell receptor alpha chain mRNA, partial sequence. KX074817 - Homo sapiens isolate PB_Subject5 clone 596-5 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX077014 - Homo sapiens isolate SG_Subject10 clone 1241-10 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KM004185 - Homo sapiens clone 160 T cell receptor beta mRNA, partial cds. KM004442 - Homo sapiens clone 417 T cell receptor alpha mRNA, partial cds. M17648 - Human T-cell receptor active alpha-chain V-region (V-J-C) mRNA, partial cds, clone AB17. AB977164 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: CM(3)-TRA26. KX075012 - Homo sapiens isolate PB_Subject3 clone 791-3 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KX074690 - Homo sapiens isolate PB_Subject4 clone 469-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. AB977401 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA134. AB976935 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: E(1)-TRA130. KX076764 - Homo sapiens isolate SG_Subject9 clone 991-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. AB977365 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA98. Z75935 - H.sapiens mRNA for T cell receptor alpha chain variable region (clone P3_13). X92035 - H.sapiens mRNA for T cell receptor alpha chain (clone 354). X92032 - H.sapiens mRNA for T cell receptor alpha chain (clone 347). X92023 - H.sapiens mRNA for T cell receptor alpha chain (clone 330). X92012 - H.sapiens mRNA for T cell receptor alpha chain (clone 315). X92002 - H.sapiens mRNA for T cell receptor alpha chain (clone 303). X92005 - H.sapiens mRNA for T cell receptor alpha chain (clone 308). X92014 - H.sapiens mRNA for T cell receptor alpha chain (clone 318). MG791606 - Homo sapiens isolate AA_Cell277_6A5_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. MG791652 - Homo sapiens isolate AA_Cell301_6C7_CDR3a T-cell receptor alpha chain mRNA, partial sequence. AB977207 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: EEM(3)-TRA111. AB306108 - Homo sapiens mRNA for T cell receptor alpha variable 20, partial cds, clone: un 255-1. KM004938 - Homo sapiens clone 914 T cell receptor alpha mRNA, partial cds. MG789035 - Homo sapiens isolate Sample1_Cell20_11B10_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. GQ502813 - Homo sapiens isolate 5 clone L35 T cell receptor alpha chain mRNA, partial cds. MG789744 - Homo sapiens isolate Sample2_Cell4_1A4_CDR3a T-cell receptor alpha chain mRNA, partial sequence. AB977374 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA107. KX074739 - Homo sapiens isolate PB_Subject4 clone 518-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. KM004423 - Homo sapiens clone 398 T cell receptor alpha mRNA, partial cds. KX077134 - Homo sapiens isolate SG_Subject8 clone 1361-8 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds. MG789541 - Homo sapiens isolate Sample1_Cell243_16C12_CDR3a T-cell receptor alpha chain mRNA, partial sequence. KM004075 - Homo sapiens clone 50 T cell receptor beta mRNA, partial cds. KM004365 - Homo sapiens clone 340 T cell receptor alpha mRNA, partial cds. AF206297 - Homo sapiens T-cell receptor alpha-chain, VA 10 mRNA, partial cds. MG789531 - Homo sapiens isolate Sample1_Cell239_16B8_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence. X60138 - Human J-alpha segment J-alpha B mRNA for J-alpha region of T-cell receptor. X04943 - Human mRNA for T-cell receptor alpha-chain HAP42 J(a)B. X60139 - Human J-alpha segment J-alpha AD210 mRNA for J-alpha region of T-cell receptor. MG789968 - Homo sapiens isolate Sample2_Cell105_2B2_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MF085360 - Homo sapiens clone DGA4 T cell receptor alpha chain mRNA, partial cds. S81574 - V alpha 1=anti-Poa p9 peptide 26 T-cell receptor alpha chain {clone 31} [human, grass pollen-sensitive donor, peripheral blood mononuclear cells, mRNA Partial, 66 nt]. MG791612 - Homo sapiens isolate AA_Cell280_6A8_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG791663 - Homo sapiens isolate AA_Cell306_6C12_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG791692 - Homo sapiens isolate AA_Cell319_6E2_CDR3a T-cell receptor alpha chain mRNA, partial sequence. MG790805 - Homo sapiens isolate Sample3_Cell230_5D5_CDR3a T-cell receptor alpha chain mRNA, partial sequence. AB976838 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: EEM(1)-TRA4-2. KM004907 - Homo sapiens clone 883 T cell receptor alpha mRNA, partial cds. KM004250 - Homo sapiens clone 225 T cell receptor beta mRNA, partial cds. KM004483 - Homo sapiens clone 458 T cell receptor alpha mRNA, partial cds. AJ309553 - Homo sapiens mRNA for T-cell receptor alpha chain, clone 454PK423 (Va1, Ja12).
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Other Names for This Gene
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Alternate Gene Symbols: S81574, V alpha 1 UCSC ID: uc021rqn.1 Representative RNA: S81574
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Gene Model Information
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category:
| nearCoding
| nonsense-mediated-decay:
| no
| RNA accession:
| S81574.1
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exon count:
| 1 | CDS single in 3' UTR:
| no
| RNA size:
| 66 |
ORF size:
| 0 | CDS single in intron:
| no
| Alignment % ID:
| 100.00 |
txCdsPredict score:
| 278.00 | frame shift in genome:
| no
| % Coverage:
| 89.39 |
has start codon:
| no
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| no
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 0 | # strange splices:
| 0 |
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for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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