Human Gene TRAJ12 (uc021rqn.1)
  Description: TRAJ12=anti-Poa p9 peptide 26 T-cell receptor alpha chain {clone 31} [human, grass pollen-sensitive donor, peripheral blood mononuclear cells, mRNA Partial, 66 nt].
Transcript (Including UTRs)
   Position: hg19 chr14:23,000,812-23,000,948 Size: 137 Total Exon Count: 1 Strand: +


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:23,000,812-23,000,948)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaEnsembl
ExonPrimerHGNCPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.00 RPKM in Adipose - Subcutaneous
Total median expression: 0.00 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  MG789408 - Homo sapiens isolate Sample1_Cell183_13B8_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
AB976743 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: N(1)-TRA62.
KM004308 - Homo sapiens clone 283 T cell receptor beta mRNA, partial cds.
MG790160 - Homo sapiens isolate Sample2_Cell193_3C12_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
MG790894 - Homo sapiens isolate Sample3_Cell272_8A3_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
KX074817 - Homo sapiens isolate PB_Subject5 clone 596-5 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
KX077014 - Homo sapiens isolate SG_Subject10 clone 1241-10 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
KM004185 - Homo sapiens clone 160 T cell receptor beta mRNA, partial cds.
KM004442 - Homo sapiens clone 417 T cell receptor alpha mRNA, partial cds.
M17648 - Human T-cell receptor active alpha-chain V-region (V-J-C) mRNA, partial cds, clone AB17.
AB977164 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: CM(3)-TRA26.
KX075012 - Homo sapiens isolate PB_Subject3 clone 791-3 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
KX074690 - Homo sapiens isolate PB_Subject4 clone 469-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
AB977401 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA134.
AB976935 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: E(1)-TRA130.
KX076764 - Homo sapiens isolate SG_Subject9 clone 991-9 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
AB977365 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA98.
Z75935 - H.sapiens mRNA for T cell receptor alpha chain variable region (clone P3_13).
X92035 - H.sapiens mRNA for T cell receptor alpha chain (clone 354).
X92032 - H.sapiens mRNA for T cell receptor alpha chain (clone 347).
X92023 - H.sapiens mRNA for T cell receptor alpha chain (clone 330).
X92012 - H.sapiens mRNA for T cell receptor alpha chain (clone 315).
X92002 - H.sapiens mRNA for T cell receptor alpha chain (clone 303).
X92005 - H.sapiens mRNA for T cell receptor alpha chain (clone 308).
X92014 - H.sapiens mRNA for T cell receptor alpha chain (clone 318).
MG791606 - Homo sapiens isolate AA_Cell277_6A5_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence.
MG791652 - Homo sapiens isolate AA_Cell301_6C7_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
AB977207 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: EEM(3)-TRA111.
AB306108 - Homo sapiens mRNA for T cell receptor alpha variable 20, partial cds, clone: un 255-1.
KM004938 - Homo sapiens clone 914 T cell receptor alpha mRNA, partial cds.
MG789035 - Homo sapiens isolate Sample1_Cell20_11B10_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence.
GQ502813 - Homo sapiens isolate 5 clone L35 T cell receptor alpha chain mRNA, partial cds.
MG789744 - Homo sapiens isolate Sample2_Cell4_1A4_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
AB977374 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: Donor4-TRA107.
KX074739 - Homo sapiens isolate PB_Subject4 clone 518-4 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
KM004423 - Homo sapiens clone 398 T cell receptor alpha mRNA, partial cds.
KX077134 - Homo sapiens isolate SG_Subject8 clone 1361-8 T-cell receptor alpha chain variable region (TRA) mRNA, partial cds.
MG789541 - Homo sapiens isolate Sample1_Cell243_16C12_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
KM004075 - Homo sapiens clone 50 T cell receptor beta mRNA, partial cds.
KM004365 - Homo sapiens clone 340 T cell receptor alpha mRNA, partial cds.
AF206297 - Homo sapiens T-cell receptor alpha-chain, VA 10 mRNA, partial cds.
MG789531 - Homo sapiens isolate Sample1_Cell239_16B8_CDR3a2 T-cell receptor alpha chain mRNA, partial sequence.
X60138 - Human J-alpha segment J-alpha B mRNA for J-alpha region of T-cell receptor.
X04943 - Human mRNA for T-cell receptor alpha-chain HAP42 J(a)B.
X60139 - Human J-alpha segment J-alpha AD210 mRNA for J-alpha region of T-cell receptor.
MG789968 - Homo sapiens isolate Sample2_Cell105_2B2_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
MF085360 - Homo sapiens clone DGA4 T cell receptor alpha chain mRNA, partial cds.
S81574 - V alpha 1=anti-Poa p9 peptide 26 T-cell receptor alpha chain {clone 31} [human, grass pollen-sensitive donor, peripheral blood mononuclear cells, mRNA Partial, 66 nt].
MG791612 - Homo sapiens isolate AA_Cell280_6A8_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
MG791663 - Homo sapiens isolate AA_Cell306_6C12_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
MG791692 - Homo sapiens isolate AA_Cell319_6E2_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
MG790805 - Homo sapiens isolate Sample3_Cell230_5D5_CDR3a T-cell receptor alpha chain mRNA, partial sequence.
AB976838 - Homo sapiens mRNA for T cell receptor alpha chain V-J-region, partial cds, isolate: EEM(1)-TRA4-2.
KM004907 - Homo sapiens clone 883 T cell receptor alpha mRNA, partial cds.
KM004250 - Homo sapiens clone 225 T cell receptor beta mRNA, partial cds.
KM004483 - Homo sapiens clone 458 T cell receptor alpha mRNA, partial cds.
AJ309553 - Homo sapiens mRNA for T-cell receptor alpha chain, clone 454PK423 (Va1, Ja12).

-  Other Names for This Gene
  Alternate Gene Symbols: S81574, V alpha 1
UCSC ID: uc021rqn.1
Representative RNA: S81574

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: S81574.1
exon count: 1CDS single in 3' UTR: no RNA size: 66
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 278.00frame shift in genome: no % Coverage: 89.39
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.