Human Gene TCL6 (uc021sbf.1)
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Sequence and Links to Tools and Databases
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Primer design for this transcript
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Genetic Association Studies of Complex Diseases and Disorders
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Genetic Association Database (archive): TCL6
CDC HuGE Published Literature: TCL6
Positive Disease Associations: Heart Rate
, QT interval
Related Studies: - Heart Rate
Fabio Marroni et al. Circulation. Cardiovascular genetics 2009, A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project., Circulation. Cardiovascular genetics.
[PubMed 20031603]
Our results suggested an association between the RR interval and GPR133 and confirmed an association between the QT interval and NOS1AP.
- QT interval
Marroni ,et al. 2009, A Genome-Wide Association Scan of RR and QT Interval Duration in 3 European Genetically Isolated Populations: The EUROSPAN Project, Circulation. Cardiovascular genetics 2009 2- 4 : 322-8.
[PubMed 20031603]
Our results suggested an association between the RR interval and GPR133 and confirmed an association between the QT interval and NOS1AP.
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MalaCards Disease Associations
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Comparative Toxicogenomics Database (CTD)
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The following chemicals interact with this gene
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
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Microarray Expression Data
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
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Descriptions from all associated GenBank mRNAs
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BX161462 - human full-length cDNA clone CS0DI060YI15 of Placenta of Homo sapiens (human). AB035338 - Homo sapiens TCL6e1 mRNA for T-cell leukemia/lymphoma 6 ORF163, complete cds, clone:pPLE1. AB035337 - Homo sapiens TCL6d1 mRNA for T-cell leukemia/lymphoma 6 ORF119, complete cds, clone:pPLD1. JD561752 - Sequence 542776 from Patent EP1572962. JD407916 - Sequence 388940 from Patent EP1572962. JD296146 - Sequence 277170 from Patent EP1572962. JD313858 - Sequence 294882 from Patent EP1572962. JD332513 - Sequence 313537 from Patent EP1572962. JD199837 - Sequence 180861 from Patent EP1572962. JD319931 - Sequence 300955 from Patent EP1572962. JD342500 - Sequence 323524 from Patent EP1572962. JD480599 - Sequence 461623 from Patent EP1572962. JD480845 - Sequence 461869 from Patent EP1572962. JD094004 - Sequence 75028 from Patent EP1572962. JD136583 - Sequence 117607 from Patent EP1572962. JD505994 - Sequence 487018 from Patent EP1572962. JD309902 - Sequence 290926 from Patent EP1572962. JD310933 - Sequence 291957 from Patent EP1572962. JD500287 - Sequence 481311 from Patent EP1572962. JD238623 - Sequence 219647 from Patent EP1572962. JD080698 - Sequence 61722 from Patent EP1572962. JD065429 - Sequence 46453 from Patent EP1572962. JD509418 - Sequence 490442 from Patent EP1572962. JD323294 - Sequence 304318 from Patent EP1572962. JD204479 - Sequence 185503 from Patent EP1572962. JD038159 - Sequence 19183 from Patent EP1572962. JD519552 - Sequence 500576 from Patent EP1572962. JD392305 - Sequence 373329 from Patent EP1572962. JD153456 - Sequence 134480 from Patent EP1572962. JD162355 - Sequence 143379 from Patent EP1572962. JD282046 - Sequence 263070 from Patent EP1572962. JD282047 - Sequence 263071 from Patent EP1572962. JD282048 - Sequence 263072 from Patent EP1572962. JD269924 - Sequence 250948 from Patent EP1572962. JD234023 - Sequence 215047 from Patent EP1572962. JD247139 - Sequence 228163 from Patent EP1572962. JD060968 - Sequence 41992 from Patent EP1572962. JD160540 - Sequence 141564 from Patent EP1572962. JD255717 - Sequence 236741 from Patent EP1572962. JD425854 - Sequence 406878 from Patent EP1572962. JD212174 - Sequence 193198 from Patent EP1572962. AB035332 - Homo sapiens TCL6a1 mRNA for T-cell leukemia/lymphoma 6 ORF141, complete cds. AB035335 - Homo sapiens TCL6c1 mRNA for T-cell leukemia/lymphoma 6 ORF105, complete cds, clone:pPLC1. AB035333 - Homo sapiens TCL6a2 mRNA for T-cell leukemia/lymphoma 6 ORF141, complete cds, clone:pPLA2. AB035334 - Homo sapiens TCL6a3 mRNA for T-cell leukemia/lymphoma 6 ORF141, complete cds, clone:pPLA3. AB035340 - Homo sapiens TCL6f1 mRNA for T-cell leukemia/lymphoma 6 ORF141, T-cell leukemia/lymphoma 6 ORF72, complete cds, clone:pDG1. AB035341 - Homo sapiens TCL6f2 mRNA for T-cell leukemia/lymphoma 6 ORF141, T-cell leukemia/lymphoma 6 ORF72, complete cds, clone:pDG2. AB035342 - Homo sapiens TCL6f3 mRNA for T-cell leukemia/lymphoma 6 ORF105, T-cell leukemia/lymphoma 6 ORF72, complete cds, clone:pDG3. AB035343 - Homo sapiens TCL6f4 mRNA for T-cell leukemia/lymphoma 6 ORF105, T-cell leukemia/lymphoma 6 ORF72, complete cds, clone:pDG4. JD309103 - Sequence 290127 from Patent EP1572962. JD479346 - Sequence 460370 from Patent EP1572962. JD324113 - Sequence 305137 from Patent EP1572962. JD387004 - Sequence 368028 from Patent EP1572962. AB527995 - Synthetic construct DNA, clone: pF1KB6823, Homo sapiens TCL6 gene for T-cell leukemia/lymphoma protein 6, without stop codon, in Flexi system. JD275802 - Sequence 256826 from Patent EP1572962. JD050505 - Sequence 31529 from Patent EP1572962. JD127766 - Sequence 108790 from Patent EP1572962. JD068408 - Sequence 49432 from Patent EP1572962. JD104386 - Sequence 85410 from Patent EP1572962. JD297276 - Sequence 278300 from Patent EP1572962. JD167973 - Sequence 148997 from Patent EP1572962. BC041075 - Homo sapiens T-cell leukemia/lymphoma 6, mRNA (cDNA clone MGC:52120 IMAGE:5923478), complete cds. AF195821 - Homo sapiens Tng2 (TNG2) mRNA, complete cds. JD083768 - Sequence 64792 from Patent EP1572962. AB035339 - Homo sapiens TCL6g1 mRNA, 3'UTR, clone:pPLG1. JD432176 - Sequence 413200 from Patent EP1572962. JD498999 - Sequence 480023 from Patent EP1572962. JD498998 - Sequence 480022 from Patent EP1572962. JD167773 - Sequence 148797 from Patent EP1572962. JD530247 - Sequence 511271 from Patent EP1572962. JD230702 - Sequence 211726 from Patent EP1572962. JD360139 - Sequence 341163 from Patent EP1572962. JD302340 - Sequence 283364 from Patent EP1572962. JD151121 - Sequence 132145 from Patent EP1572962. JD231310 - Sequence 212334 from Patent EP1572962. JD203153 - Sequence 184177 from Patent EP1572962. JD168581 - Sequence 149605 from Patent EP1572962. JD039279 - Sequence 20303 from Patent EP1572962. JD049341 - Sequence 30365 from Patent EP1572962. JD040876 - Sequence 21900 from Patent EP1572962. JD319048 - Sequence 300072 from Patent EP1572962. JD368749 - Sequence 349773 from Patent EP1572962. JD368750 - Sequence 349774 from Patent EP1572962.
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Other Names for This Gene
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Alternate Gene Symbols: AB035338 UCSC ID: uc021sbf.1 RefSeq Accession: NR_028288
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Gene Model Information
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category:
| noncoding
| nonsense-mediated-decay:
| no
| RNA accession:
| AB035338.1
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exon count:
| 8 | CDS single in 3' UTR:
| no
| RNA size:
| 2223 |
ORF size:
| 0 | CDS single in intron:
| no
| Alignment % ID:
| 99.63 |
txCdsPredict score:
| 283.00 | frame shift in genome:
| no
| % Coverage:
| 98.52 |
has start codon:
| no
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| no
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 867 | # strange splices:
| 0 |
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Click here
for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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