Human Gene CLPTM1 (uc021uvo.1)
Description: Homo sapiens cleft lip and palate associated transmembrane protein 1 (CLPTM1), transcript variant 3, non-coding RNA.
Transcript (Including UTRs)
Position: hg19 chr19:45,495,491-45,496,598 Size: 1,108 Total Exon Count: 2 Strand: +
Coding Region
Position: hg19 chr19:45,495,502-45,496,307 Size: 806 Coding Exon Count: 2
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Primer design for this transcript
Genetic Association Studies of Complex Diseases and Disorders
Genetic Association Database (archive): CLPTM1
CDC HuGE Published Literature: CLPTM1
MalaCards Disease Associations
MalaCards Gene Search: CLPTM1
Diseases sorted by gene-association score: cleft lip (47)
Comparative Toxicogenomics Database (CTD)
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
AK316094 - Homo sapiens cDNA, FLJ78993 complete cds, highly similar to Cleft lip and palate transmembrane protein 1.AK293314 - Homo sapiens cDNA FLJ59465 complete cds, highly similar to Cleft lip and palate transmembrane protein 1.AK304480 - Homo sapiens cDNA FLJ58081 complete cds, highly similar to Cleft lip and palate transmembrane protein 1.LF384224 - JP 2014500723-A/191727: Polycomb-Associated Non-Coding RNAs.BC004865 - Homo sapiens cleft lip and palate associated transmembrane protein 1, mRNA (cDNA clone MGC:10593 IMAGE:3840991), complete cds.AK223553 - Homo sapiens mRNA for cleft lip and palate associated transmembrane protein 1 variant, clone: FCC126F08.AK074935 - Homo sapiens cDNA FLJ90454 fis, clone NT2RP3001560, highly similar to Cleft lip and palate transmembrane protein 1.AK075262 - Homo sapiens cDNA FLJ90781 fis, clone THYRO1001242, highly similar to Homo sapiens cleft lip and palate transmembrane protein 1 (CLPTM1) mRNA.AF037339 - Homo sapiens cleft lip and palate transmembrane protein 1 (CLPTM1) mRNA, complete cds.BC012359 - Homo sapiens cleft lip and palate associated transmembrane protein 1, mRNA (cDNA clone MGC:20444 IMAGE:4685026), complete cds.DQ895436 - Synthetic construct Homo sapiens clone IMAGE:100009896; FLH184387.01L; RZPDo839F05143D cleft lip and palate associated transmembrane protein 1 (CLPTM1) gene, encodes complete protein.KJ905716 - Synthetic construct Homo sapiens clone ccsbBroadEn_15386 CLPTM1 gene, encodes complete protein.DQ892236 - Synthetic construct clone IMAGE:100004866; FLH184391.01X; RZPDo839F05144D cleft lip and palate associated transmembrane protein 1 (CLPTM1) gene, encodes complete protein.KU177986 - Homo sapiens cleft lip and palate associated transmembrane protein 1 isoform 1 (CLPTM1) mRNA, partial cds, alternatively spliced.KU177987 - Homo sapiens cleft lip and palate associated transmembrane protein 1 isoform 2 (CLPTM1) mRNA, complete cds.BT007262 - Homo sapiens cleft lip and palate associated transmembrane protein 1 mRNA, complete cds.KJ896619 - Synthetic construct Homo sapiens clone ccsbBroadEn_06013 CLPTM1 gene, encodes complete protein.MA619801 - JP 2018138019-A/191727: Polycomb-Associated Non-Coding RNAs.AK027698 - Homo sapiens cDNA FLJ14792 fis, clone NT2RP4001149, highly similar to Homo sapiens cleft lip and palate transmembrane protein 1 (CLPTM1) mRNA.LF366984 - JP 2014500723-A/174487: Polycomb-Associated Non-Coding RNAs.LF366983 - JP 2014500723-A/174486: Polycomb-Associated Non-Coding RNAs.JD142248 - Sequence 123272 from Patent EP1572962.JD391955 - Sequence 372979 from Patent EP1572962.JD484758 - Sequence 465782 from Patent EP1572962.JD496689 - Sequence 477713 from Patent EP1572962.JD161317 - Sequence 142341 from Patent EP1572962.JD085229 - Sequence 66253 from Patent EP1572962.JD437122 - Sequence 418146 from Patent EP1572962.JD446029 - Sequence 427053 from Patent EP1572962.JD390286 - Sequence 371310 from Patent EP1572962.JD056225 - Sequence 37249 from Patent EP1572962.MA602561 - JP 2018138019-A/174487: Polycomb-Associated Non-Coding RNAs.MA602560 - JP 2018138019-A/174486: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Alternate Gene Symbols: AK027698UCSC ID: uc021uvo.1RefSeq Accession: NR_040006
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
AK027698.1
exon count:
2 CDS single in 3' UTR:
no
RNA size:
921
ORF size:
654 CDS single in intron:
no
Alignment % ID:
99.89
txCdsPredict score:
854.00 frame shift in genome:
no
% Coverage:
100.00
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.