Human Gene SREK1IP1 (uc021xzh.1)
  Description: Homo sapiens SREK1-interacting protein 1 (SREK1IP1), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr5:64,060,805-64,064,496 Size: 3,692 Total Exon Count: 2 Strand: -


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:64,060,805-64,064,496)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
ExonPrimerGeneNetworkH-INVHGNCLynxPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.10 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 150.66 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AL832348 - Homo sapiens mRNA; cDNA DKFZp451A086 (from clone DKFZp451A086).
AK094073 - Homo sapiens cDNA FLJ36754 fis, clone UTERU2018127.
AX748442 - Sequence 1967 from Patent EP1308459.
BC127085 - Homo sapiens SFRS12-interacting protein 1, mRNA (cDNA clone MGC:150548 IMAGE:40122236), complete cds.
BC127086 - Homo sapiens SFRS12-interacting protein 1, mRNA (cDNA clone MGC:150549 IMAGE:40122239), complete cds.
BC108716 - Homo sapiens SFRS12-interacting protein 1, mRNA (cDNA clone MGC:131910 IMAGE:6184559), complete cds.
BC047006 - Homo sapiens cDNA clone IMAGE:4429121.
HM370403 - Homo sapiens SFRS12-interacting protein 1 (SFRS12IP1) mRNA, 5' UTR, alternatively spliced.
JD133357 - Sequence 114381 from Patent EP1572962.
JD433200 - Sequence 414224 from Patent EP1572962.
JD549922 - Sequence 530946 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: HM370403
UCSC ID: uc021xzh.1
RefSeq Accession: NM_173829

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: HM370403.1
exon count: 2CDS single in 3' UTR: no RNA size: 266
ORF size: 0CDS single in intron: no Alignment % ID: 99.62
txCdsPredict score: 344.00frame shift in genome: no % Coverage: 99.62
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.