Human Gene STAG3L3 (uc022afp.1)
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Sequence and Links to Tools and Databases
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Primer design for this transcript
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Comparative Toxicogenomics Database (CTD)
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The following chemicals interact with this gene
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
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Microarray Expression Data
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
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Descriptions from all associated GenBank mRNAs
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AK303592 - Homo sapiens cDNA FLJ52235 complete cds, moderately similar to Cohesin subunit SA-3. AL137492 - Homo sapiens mRNA; cDNA DKFZp434A0131 (from clone DKFZp434A0131). BC108680 - Homo sapiens stromal antigen 3-like 1, mRNA (cDNA clone IMAGE:5416073), complete cds. BC010433 - Homo sapiens stromal antigen 3-like 1, mRNA (cDNA clone IMAGE:3531376), **** WARNING: chimeric clone ****. BC030509 - Homo sapiens stromal antigen 3-like 1, mRNA (cDNA clone IMAGE:4400104), complete cds. JD397731 - Sequence 378755 from Patent EP1572962. JD070104 - Sequence 51128 from Patent EP1572962. JD070105 - Sequence 51129 from Patent EP1572962. BC119761 - Homo sapiens stromal antigen 3-like 2, mRNA (cDNA clone MGC:149883 IMAGE:40119328), complete cds. BC119762 - Homo sapiens stromal antigen 3-like 1, mRNA (cDNA clone IMAGE:40119330), complete cds. DQ587573 - Homo sapiens piRNA piR-54685, complete sequence. JD204945 - Sequence 185969 from Patent EP1572962. KJ902644 - Synthetic construct Homo sapiens clone ccsbBroadEn_12038 STAG3L1 gene, encodes complete protein. BC066937 - Homo sapiens stromal antigen 3-like 3, mRNA (cDNA clone MGC:87278 IMAGE:4826886), complete cds. AY313779 - Homo sapiens ARM-repeat protein mRNA, complete cds; alternatively spliced. JD307418 - Sequence 288442 from Patent EP1572962. AK289466 - Homo sapiens cDNA FLJ78546 complete cds. AK291820 - Homo sapiens cDNA FLJ76564 complete cds. JD504038 - Sequence 485062 from Patent EP1572962. CU688206 - Synthetic construct Homo sapiens gateway clone IMAGE:100021053 5' read LOC442578 mRNA. HQ448531 - Synthetic construct Homo sapiens clone IMAGE:100071966; CCSB011002_01 similar to Cohesin subunit SA-3 (Stromal antigen 3) (Stromalin 3) (SCC3 homolog 3) (STAG3L3) gene, encodes complete protein. KJ900777 - Synthetic construct Homo sapiens clone ccsbBroadEn_10171 STAG3L3 gene, encodes complete protein. JD506478 - Sequence 487502 from Patent EP1572962. JD497104 - Sequence 478128 from Patent EP1572962. JD334354 - Sequence 315378 from Patent EP1572962. JD564669 - Sequence 545693 from Patent EP1572962.
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Other Names for This Gene
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Alternate Gene Symbols: NR_040582, uc022afq.1 UCSC ID: uc022afp.1 RefSeq Accession: NR_040582
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Gene Model Information
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category:
| noncoding
| nonsense-mediated-decay:
| no
| RNA accession:
| NR_040582.1
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exon count:
| 9 | CDS single in 3' UTR:
| no
| RNA size:
| 1993 |
ORF size:
| 0 | CDS single in intron:
| no
| Alignment % ID:
| 100.00 |
txCdsPredict score:
| -20.00 | frame shift in genome:
| no
| % Coverage:
| 99.25 |
has start codon:
| no
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| no
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 709 | # strange splices:
| 0 |
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Click here
for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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