Human Gene ZFAND1 (uc022awu.1)
Description: Homo sapiens zinc finger, AN1-type domain 1 (ZFAND1), transcript variant 6, non-coding RNA.
Transcript (Including UTRs)
Position: hg19 chr8:82,613,566-82,633,539 Size: 19,974 Total Exon Count: 7 Strand: -
Coding Region
Position: hg19 chr8:82,614,930-82,627,075 Size: 12,146 Coding Exon Count: 4
Data last updated at UCSC: 2013-06-14
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: ZFAN1_HUMAN
DESCRIPTION: RecName: Full=AN1-type zinc finger protein 1;
SIMILARITY: Contains 2 AN1-type zinc fingers.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR000058 - Znf_AN1
ModBase Predicted Comparative 3D Structure on Q8TCF1
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Details
Gene Sorter
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AL833030 - Homo sapiens mRNA; cDNA DKFZp666I148 (from clone DKFZp666I148).LF206076 - JP 2014500723-A/13579: Polycomb-Associated Non-Coding RNAs.BC051857 - Homo sapiens zinc finger, AN1-type domain 1, mRNA (cDNA clone MGC:60212 IMAGE:6012307), complete cds.BC056877 - Homo sapiens zinc finger, AN1-type domain 1, mRNA (cDNA clone MGC:64953 IMAGE:6140929), complete cds.AK225195 - Homo sapiens mRNA for AN1-type zinc finger protein 1 variant, clone: COL01020.AK024069 - Homo sapiens cDNA FLJ14007 fis, clone Y79AA1002407.JD251361 - Sequence 232385 from Patent EP1572962.JD350390 - Sequence 331414 from Patent EP1572962.JD509982 - Sequence 491006 from Patent EP1572962.AK304111 - Homo sapiens cDNA FLJ52833 complete cds, highly similar to AN1-type zinc finger protein 1.BC022251 - Homo sapiens zinc finger, AN1-type domain 1, mRNA (cDNA clone MGC:22190 IMAGE:4695118), complete cds.JD299502 - Sequence 280526 from Patent EP1572962.JD561712 - Sequence 542736 from Patent EP1572962.JD372103 - Sequence 353127 from Patent EP1572962.JD511201 - Sequence 492225 from Patent EP1572962.JD309216 - Sequence 290240 from Patent EP1572962.HQ447700 - Synthetic construct Homo sapiens clone IMAGE:100071028; CCSB012998_01 zinc finger, AN1-type domain 1 (ZFAND1) gene, encodes complete protein.CR457323 - Homo sapiens full open reading frame cDNA clone RZPDo834G0313D for gene FLJ14007, hypothetical protein FLJ14007; complete cds, incl. stopcodon.MA441653 - JP 2018138019-A/13579: Polycomb-Associated Non-Coding RNAs.
Other Names for This Gene
Alternate Gene Symbols: NR_033195, Q658R7, Q6IA32, Q6PGQ6, Q8TCF1, Q9H810, ZFAN1_HUMANUCSC ID: uc022awu.1RefSeq Accession: NR_033195
Protein: Q8TCF1
(aka ZFAN1_HUMAN)
Gene Model Information
category:
coding
nonsense-mediated-decay:
no
RNA accession:
NR_033195.1
exon count:
7 CDS single in 3' UTR:
no
RNA size:
2148
ORF size:
486 CDS single in intron:
no
Alignment % ID:
100.00
txCdsPredict score:
1020.50 frame shift in genome:
no
% Coverage:
99.26
has start codon:
yes
stop codon in genome:
no
# of Alignments:
1
has end codon:
yes
retained intron:
no
# AT/AC introns
0
selenocysteine:
no
end bleed into intron:
0 # strange splices:
0
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Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.