Human Gene TOR2A (uc022bnq.1)
  Description: Homo sapiens torsin family 2, member A (TOR2A), transcript variant 7, mRNA.
RefSeq Summary (NM_001252021): This gene encodes a member of the AAA family of adenosine triphosphatases with similarity to Clp proteases and heat shock proteins. Alternative splicing at this locus results in the translation of multiple isoforms of the encoded protein, some of which contain salusin peptides in the C-terminal region. These peptides may play roles in hypotension, myocardial growth and the induction of mitogenesis, and may also be involved in the pathogenesis of atherosclerosis. The antimicrobial peptide salusin-beta has antibacterial activity. [provided by RefSeq, Nov 2014].
Transcript (Including UTRs)
   Position: hg19 chr9:130,493,803-130,497,628 Size: 3,826 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr9:130,494,313-130,495,770 Size: 1,458 Coding Exon Count: 3 

Page IndexSequence and LinksPrimersGenetic AssociationsCTDGene Alleles
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:130,493,803-130,497,628)mRNA (may differ from genome)Protein (159 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsH-INV
HGNCLynxMGIOMIMPubMedWikipedia
BioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): TOR2A
CDC HuGE Published Literature: TOR2A

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -152.50296-0.515 Picture PostScript Text
3' UTR -195.70510-0.384 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  LF205650 - JP 2014500723-A/13153: Polycomb-Associated Non-Coding RNAs.
BC022985 - Homo sapiens, clone IMAGE:4931735, mRNA.
BC080527 - Homo sapiens torsin family 2, member A, mRNA (cDNA clone IMAGE:4576271), partial cds.
AY358180 - Homo sapiens clone DNA168044 TOR2A (UNQ6408) mRNA, complete cds.
BC062340 - Homo sapiens torsin family 2, member A, mRNA (cDNA clone IMAGE:6372013), partial cds.
AK027677 - Homo sapiens cDNA FLJ14771 fis, clone NT2RP3004282, weakly similar to Homo sapiens torsinA (DYT1) mRNA.
AK075520 - Homo sapiens cDNA PSEC0218 fis, clone HEMBA1005096, highly similar to Torsin family 2, member A.
AK055034 - Homo sapiens cDNA FLJ30472 fis, clone BRAWH1000083.
AK092388 - Homo sapiens cDNA FLJ35069 fis, clone PLACE5000129.
AX747514 - Sequence 1039 from Patent EP1308459.
JD148395 - Sequence 129419 from Patent EP1572962.
LF346843 - JP 2014500723-A/154346: Polycomb-Associated Non-Coding RNAs.
JD524931 - Sequence 505955 from Patent EP1572962.
JD115777 - Sequence 96801 from Patent EP1572962.
JD398436 - Sequence 379460 from Patent EP1572962.
JD385587 - Sequence 366611 from Patent EP1572962.
JD509158 - Sequence 490182 from Patent EP1572962.
JD156230 - Sequence 137254 from Patent EP1572962.
JD372566 - Sequence 353590 from Patent EP1572962.
JD491843 - Sequence 472867 from Patent EP1572962.
JD476939 - Sequence 457963 from Patent EP1572962.
JD371996 - Sequence 353020 from Patent EP1572962.
JD210016 - Sequence 191040 from Patent EP1572962.
JD141999 - Sequence 123023 from Patent EP1572962.
JD339673 - Sequence 320697 from Patent EP1572962.
JD350706 - Sequence 331730 from Patent EP1572962.
JD138507 - Sequence 119531 from Patent EP1572962.
BC100907 - Homo sapiens torsin family 2, member A, mRNA (cDNA clone IMAGE:40003684), complete cds.
BC100908 - Homo sapiens torsin family 2, member A, mRNA (cDNA clone IMAGE:40003686), complete cds.
BC100909 - Homo sapiens torsin family 2, member A, mRNA (cDNA clone IMAGE:40003687), complete cds.
BC100910 - Homo sapiens torsin family 2, member A, mRNA (cDNA clone IMAGE:40003688), complete cds.
BC156122 - Synthetic construct Homo sapiens clone IMAGE:100062363, MGC:190484 torsin family 2, member A (TOR2A) mRNA, encodes complete protein.
BC156918 - Synthetic construct Homo sapiens clone IMAGE:100062771, MGC:190610 torsin family 2, member A (TOR2A) mRNA, encodes complete protein.
BC160144 - Synthetic construct Homo sapiens clone IMAGE:100064176, MGC:193259 torsin family 2, member A (TOR2A) mRNA, encodes complete protein.
LF346841 - JP 2014500723-A/154344: Polycomb-Associated Non-Coding RNAs.
MA582420 - JP 2018138019-A/154346: Polycomb-Associated Non-Coding RNAs.
MA582418 - JP 2018138019-A/154344: Polycomb-Associated Non-Coding RNAs.
MA441227 - JP 2018138019-A/13153: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_001252021, NP_001238950
UCSC ID: uc022bnq.1
RefSeq Accession: NM_001252021

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001252021.1
exon count: 4CDS single in 3' UTR: no RNA size: 1319
ORF size: 480CDS single in intron: no Alignment % ID: 99.92
txCdsPredict score: 943.50frame shift in genome: no % Coverage: 97.50
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.