Human Gene LEPR (ENST00000371060.7) from GENCODE V44
  Description: Homo sapiens leptin receptor (LEPR), transcript variant 3, mRNA. (from RefSeq NM_001003679)
RefSeq Summary (NM_001003679): The protein encoded by this gene belongs to the gp130 family of cytokine receptors that are known to stimulate gene transcription via activation of cytosolic STAT proteins. This protein is a receptor for leptin (an adipocyte-specific hormone that regulates body weight), and is involved in the regulation of fat metabolism, as well as in a novel hematopoietic pathway that is required for normal lymphopoiesis. Mutations in this gene have been associated with obesity and pituitary dysfunction. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. It is noteworthy that this gene and LEPROT gene (GeneID:54741) share the same promoter and the first 2 exons, however, encode distinct proteins (PMID:9207021).[provided by RefSeq, Nov 2010].
Gencode Transcript: ENST00000371060.7
Gencode Gene: ENSG00000116678.20
Transcript (Including UTRs)
   Position: hg38 chr1:65,420,652-65,635,428 Size: 214,777 Total Exon Count: 20 Strand: +
Coding Region
   Position: hg38 chr1:65,565,566-65,633,169 Size: 67,604 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:65,420,652-65,635,428)mRNA (may differ from genome)Protein (896 aa)
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-  Comments and Description Text from UniProtKB
  ID: LEPR_HUMAN
DESCRIPTION: RecName: Full=Leptin receptor; Short=LEP-R; AltName: Full=HuB219; AltName: Full=OB receptor; Short=OB-R; AltName: CD_antigen=CD295; Flags: Precursor;
FUNCTION: Receptor for obesity factor (leptin). On ligand binding, mediates signaling through JAK2/STAT3. Involved in the regulation of fat metabolism and, in a hematopoietic pathway, required for normal lymphopoiesis. May play a role in reproduction. Can also mediate the ERK/FOS signaling pathway (By similarity).
SUBUNIT: On leptin stimulation, homodimerizes. The phosphorylated receptor binds a number of SH2 domain-containing proteins such as STAT3, PTPN11, and SOCS3 (By similarity). Interaction with SOCS3 inhibits LRb signaling (By similarity).
INTERACTION: P62993:GRB2; NbExp=3; IntAct=EBI-518596, EBI-401755;
SUBCELLULAR LOCATION: Cell membrane; Single-pass type I membrane protein.
SUBCELLULAR LOCATION: Isoform E: Secreted (Probable).
TISSUE SPECIFICITY: Isoform A is expressed in fetal liver and in hematopoietic tissues and choroid plexus. In adults highest expression in heart, liver, small intestine, prostate and ovary. Low level in lung and kidney. Isoform B is highly expressed in hypothalamus.
DOMAIN: The cytoplasmic domain may be essential for intracellular signal transduction by activation of JAK tyrosine kinase and STATs.
DOMAIN: The WSXWS motif appears to be necessary for proper protein folding and thereby efficient intracellular transport and cell- surface receptor binding.
DOMAIN: The box 1 motif is required for JAK interaction and/or activation.
PTM: On ligand binding, phosphorylated on two conserved C-terminal tyrosine residues (isoform B only) by JAK2. Tyr-986 is required for complete binding and activation of PTPN11, ERK/FOS activation and, for interaction with SOCS3 (By similarity). Phosphorylation on Tyr-1141 is required for STAT3 binding/activation.
SIMILARITY: Belongs to the type I cytokine receptor family. Type 2 subfamily.
SIMILARITY: Contains 4 fibronectin type-III domains.
SIMILARITY: Contains 1 Ig-like (immunoglobulin-like) domain.

-  Primer design for this transcript
 

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-  MalaCards Disease Associations
  MalaCards Gene Search: LEPR
Diseases sorted by gene-association score: obesity, morbid, due to leptin receptor deficiency* (1350), morbid obesity (20), obesity (11), anorexia nervosa (10), clostridium difficile colitis (10), fatty liver disease (9), lipoblastoma (9), glucose intolerance (9), eating disorder (8), severe pre-eclampsia (6), obstructive sleep apnea (6), sleep apnea (5), hermansky-pudlak syndrome 5 (5), overnutrition (5), adrenal insufficiency, congenital, with 46xy sex reversal, partial or complete (4), diabetes mellitus, noninsulin-dependent (2), bardet-biedl syndrome (2), kallmann syndrome (1), diabetes mellitus, insulin-dependent (1), acquired metabolic disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 9.64 RPKM in Nerve - Tibial
Total median expression: 115.28 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -75.90185-0.410 Picture PostScript Text
3' UTR -483.902259-0.214 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003961 - Fibronectin_type3
IPR003529 - Hematopoietin_rcpt_Gp130_CS
IPR003531 - Hempt_rcpt_S_F1_CS
IPR007110 - Ig-like
IPR013783 - Ig-like_fold
IPR010457 - IgC2-like_lig-bd
IPR015752 - Lep_receptor

Pfam Domains:
PF06328 - Ig-like C2-type domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3V6O - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P48357
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004888 transmembrane signaling receptor activity
GO:0004896 cytokine receptor activity
GO:0005515 protein binding
GO:0038021 leptin receptor activity
GO:0042802 identical protein binding

Biological Process:
GO:0001525 angiogenesis
GO:0006112 energy reserve metabolic process
GO:0006909 phagocytosis
GO:0007166 cell surface receptor signaling pathway
GO:0007275 multicellular organism development
GO:0008203 cholesterol metabolic process
GO:0010507 negative regulation of autophagy
GO:0019953 sexual reproduction
GO:0030217 T cell differentiation
GO:0033210 leptin-mediated signaling pathway
GO:0042593 glucose homeostasis
GO:0044321 response to leptin
GO:0045721 negative regulation of gluconeogenesis
GO:0046850 regulation of bone remodeling
GO:0051346 negative regulation of hydrolase activity
GO:0060259 regulation of feeding behavior
GO:0097009 energy homeostasis
GO:0098868 bone growth

Cellular Component:
GO:0005576 extracellular region
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0016323 basolateral plasma membrane
GO:0043235 receptor complex


-  Descriptions from all associated GenBank mRNAs
  DD153958 - New method.
U66496 - Human leptin receptor splice variant form 12.1 mRNA, complete cds.
U66495 - Human leptin receptor splice variant form 6.4 mRNA, complete cds.
U43168 - Human leptin receptor (Ob-r) mRNA, complete cds.
AK290208 - Homo sapiens cDNA FLJ77491 complete cds, highly similar to Homo sapiens leptin receptor (LEPR), transcript variant 2, mRNA.
BC131779 - Homo sapiens leptin receptor, mRNA (cDNA clone IMAGE:40124032), complete cds.
U66497 - Human leptin receptor splice variant form 13.2 mRNA, complete cds.
BC031086 - Homo sapiens leptin receptor, mRNA (cDNA clone IMAGE:5284598), partial cds.
U52913 - Human B219/OB receptor isoform HuB219.2 precursor mRNA, complete cds.
U52912 - Human B219/OB receptor isoform HuB219.1 precursor mRNA, complete cds.
U52914 - Human B219/OB receptor isoform HuB219.3 precursor mRNA, complete cds.
BC140007 - Homo sapiens cDNA clone IMAGE:8860388.
LF206534 - JP 2014500723-A/14037: Polycomb-Associated Non-Coding RNAs.
MA442111 - JP 2018138019-A/14037: Polycomb-Associated Non-Coding RNAs.
DD153959 - New method.
Y12670 - Homo sapiens mRNA for leptin receptor gene-related protein.
AK074841 - Homo sapiens cDNA FLJ90360 fis, clone NT2RP2003664, highly similar to Leptin receptor gene-related protein.
BC056250 - Homo sapiens leptin receptor overlapping transcript, mRNA (cDNA clone MGC:61988 IMAGE:4328021), complete cds.
AK094801 - Homo sapiens cDNA FLJ37482 fis, clone BRAWH2013941.
AK309370 - Homo sapiens cDNA, FLJ99411.
KJ894060 - Synthetic construct Homo sapiens clone ccsbBroadEn_03454 LEPROT gene, encodes complete protein.
EU832353 - Synthetic construct Homo sapiens clone HAIB:100067382; DKFZo008H0727 leptin receptor overlapping transcript protein (LEPROT) gene, encodes complete protein.
EU832438 - Synthetic construct Homo sapiens clone HAIB:100067467; DKFZo004H0728 leptin receptor overlapping transcript protein (LEPROT) gene, encodes complete protein.
CR541647 - Homo sapiens full open reading frame cDNA clone RZPDo834A0427D for gene LEPR, leptin receptor; complete cds, without stopcodon.
CR541737 - Homo sapiens full open reading frame cDNA clone RZPDo834H0129D for gene LEPR, leptin receptor; complete cds, incl. stopcodon.
BC011027 - Homo sapiens leptin receptor overlapping transcript, mRNA (cDNA clone IMAGE:4296363), partial cds.
LF355918 - JP 2014500723-A/163421: Polycomb-Associated Non-Coding RNAs.
MA591495 - JP 2018138019-A/163421: Polycomb-Associated Non-Coding RNAs.
U50748 - Homo sapiens leptin receptor short form (db) mRNA, complete cds.
AB587571 - Synthetic construct DNA, clone: pF1KE1599, Homo sapiens LEPR gene for leptin receptor, without stop codon, in Flexi system.
BC160009 - Synthetic construct Homo sapiens clone IMAGE:100063945, MGC:193124 leptin receptor (LEPR) mRNA, encodes complete protein.
CR627284 - Homo sapiens mRNA; cDNA DKFZp686B1731 (from clone DKFZp686B1731).
AK001042 - Homo sapiens cDNA FLJ10180 fis, clone HEMBA1004207, highly similar to Homo sapiens leptin receptor short form mRNA.
JA287200 - Sequence 2 from Patent WO2011017697.
JA287202 - Sequence 4 from Patent WO2011017697.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04060 - Cytokine-cytokine receptor interaction
hsa04080 - Neuroactive ligand-receptor interaction
hsa04630 - Jak-STAT signaling pathway
hsa04920 - Adipocytokine signaling pathway

Reactome (by CSHL, EBI, and GO)

Protein P48357 (Reactome details) participates in the following event(s):

R-HSA-2586559 Leptin Binds Leptin Receptor
R-HSA-2671747 Phosphorylated LEPR Binds SHP2 (PTPN11)
R-HSA-2671855 Phosphorylated LEPR Binds STAT5
R-HSA-2671868 Phosphorylated LEPR Binds STAT3
R-HSA-2671872 Phosphorylated LEP:LEPR:JAK2 Binds SH2B1
R-HSA-2672302 Phosphorylated LEPR Binds SOCS3
R-HSA-2586553 JAK2 Phosphorylates LEPR
R-HSA-2671839 Phosphorylated STAT3 Dissociates from Leptin Receptor
R-HSA-2671876 Phosphorylated STAT5 Dissociates from Leptin Receptor
R-HSA-2586555 JAK2 Autophosphorylates in Response to Leptin
R-HSA-2671742 JAK2 Phosphorylates SHP2 (PTPN11) in Response to Leptin
R-HSA-2671829 JAK2 Phosphorylates STAT5 in Response to Leptin
R-HSA-2671862 JAK2 Phosphorylates IRS in Response to Leptin
R-HSA-2671873 Phosphorylated LEP:LEPR:JAK2:SH2B1 Binds IRS1/2
R-HSA-2671850 JAK2 Phosphoryates STAT3 in Response to Leptin
R-HSA-2586552 Signaling by Leptin
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: DB, ENST00000371060.1, ENST00000371060.2, ENST00000371060.3, ENST00000371060.4, ENST00000371060.5, ENST00000371060.6, LEPR_HUMAN, NM_001003679, OBR, P48357, Q13592, Q13593, Q13594, Q92919, Q92920, Q92921, uc001dch.1, uc001dch.2, uc001dch.3, uc001dch.4
UCSC ID: ENST00000371060.7
RefSeq Accession: NM_001003679
Protein: P48357 (aka LEPR_HUMAN)
CCDS: CCDS30740.1, CCDS55604.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.