Human Gene SLC44A5 (ENST00000370855.5) from GENCODE V44
Description: Homo sapiens solute carrier family 44 member 5 (SLC44A5), transcript variant 1, mRNA. (from RefSeq NM_152697)
Gencode Transcript: ENST00000370855.5
Gencode Gene: ENSG00000137968.17
Transcript (Including UTRs)
Position: hg38 chr1:75,204,475-75,611,084 Size: 406,610 Total Exon Count: 24 Strand: -
Coding Region
Position: hg38 chr1:75,206,607-75,541,447 Size: 334,841 Coding Exon Count: 23
Data last updated at UCSC: 2023-08-18 00:09:47
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: CTL5_HUMAN
DESCRIPTION: RecName: Full=Choline transporter-like protein 5; AltName: Full=Solute carrier family 44 member 5;
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein (By similarity).SIMILARITY: Belongs to the CTL (choline transporter-like) family.SEQUENCE CAUTION: Sequence=BAC03655.1; Type=Erroneous initiation;
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR007603 - Choline_transptr-like
Pfam Domains: PF04515 - Plasma-membrane choline transporter
ModBase Predicted Comparative 3D Structure on Q8NCS7
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AK128063 - Homo sapiens cDNA FLJ46183 fis, clone TESTI4004653, moderately similar to Homo sapiens CTL2 gene (CTL2).BC034580 - Homo sapiens solute carrier family 44, member 5, mRNA (cDNA clone MGC:42574 IMAGE:4824861), complete cds.BC051740 - Homo sapiens solute carrier family 44, member 5, mRNA (cDNA clone MGC:51115 IMAGE:4824908), complete cds.AK093170 - Homo sapiens cDNA FLJ35851 fis, clone TESTI2007040, moderately similar to Homo sapiens CTL2 gene.AX747970 - Sequence 1495 from Patent EP1308459.AK296924 - Homo sapiens cDNA FLJ60665 complete cds, highly similar to Choline transporter-like protein 5.AK299573 - Homo sapiens cDNA FLJ55381 complete cds, highly similar to Choline transporter-like protein 5.AK296941 - Homo sapiens cDNA FLJ60667 complete cds, highly similar to Choline transporter-like protein 5.BC028743 - Homo sapiens solute carrier family 44, member 5, mRNA (cDNA clone MGC:34032 IMAGE:4828797), complete cds.DQ892458 - Synthetic construct clone IMAGE:100005088; FLH186505.01X; RZPDo839F0371D solute carrier family 44, member 5 (SLC44A5) gene, encodes complete protein.KJ900438 - Synthetic construct Homo sapiens clone ccsbBroadEn_09832 SLC44A5 gene, encodes complete protein.DQ895670 - Synthetic construct Homo sapiens clone IMAGE:100010130; FLH186501.01L; RZPDo839F0361D solute carrier family 44, member 5 (SLC44A5) gene, encodes complete protein.CU688566 - Synthetic construct Homo sapiens gateway clone IMAGE:100020754 5' read SLC44A5 mRNA.AK091400 - Homo sapiens cDNA FLJ34081 fis, clone FCBBF3004261, moderately similar to Homo sapiens CTL2 gene.AX746959 - Sequence 484 from Patent EP1308459.JD224317 - Sequence 205341 from Patent EP1572962.JD107247 - Sequence 88271 from Patent EP1572962.JD298140 - Sequence 279164 from Patent EP1572962.
Biochemical and Signaling Pathways
Other Names for This Gene
Alternate Gene Symbols: B5MCU3, CTL5, CTL5_HUMAN, ENST00000370855.1, ENST00000370855.2, ENST00000370855.3, ENST00000370855.4, NM_152697, Q4G0K0, Q8NA44, Q8NB86, Q8NCS7, uc001dgu.1, uc001dgu.2, uc001dgu.3, uc001dgu.4UCSC ID: ENST00000370855.5RefSeq Accession: NM_152697
Protein: Q8NCS7
(aka CTL5_HUMAN)
CCDS: CCDS667.1
Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.