Human Gene DNAJB4 (ENST00000370763.6) from GENCODE V44
  Description: Homo sapiens DnaJ heat shock protein family (Hsp40) member B4 (DNAJB4), transcript variant 1, mRNA. (from RefSeq NM_007034)
RefSeq Summary (NM_007034): The protein encoded by this gene is a molecular chaperone, tumor suppressor, and member of the heat shock protein-40 family. The encoded protein binds the cell adhesion protein E-cadherin and targets it to the plasma membrane. This protein also binds incorrectly folded E-cadherin and targets it for endoplasmic reticulum-associated degradation. This gene is a strong tumor suppressor for colorectal carcinoma, and downregulation of it may serve as a good biomarker for predicting patient outcomes. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2015].
Gencode Transcript: ENST00000370763.6
Gencode Gene: ENSG00000162616.9
Transcript (Including UTRs)
   Position: hg38 chr1:78,004,939-78,017,964 Size: 13,026 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg38 chr1:78,005,111-78,016,247 Size: 11,137 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:78,004,939-78,017,964)mRNA (may differ from genome)Protein (337 aa)
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-  Comments and Description Text from UniProtKB
  ID: DNJB4_HUMAN
DESCRIPTION: RecName: Full=DnaJ homolog subfamily B member 4; AltName: Full=Heat shock 40 kDa protein 1 homolog; Short=HSP40 homolog; Short=Heat shock protein 40 homolog; AltName: Full=Human liver DnaJ-like protein;
FUNCTION: Probable chaperone.
SUBUNIT: Homodimer. The C-terminal section interacts with the C- terminal tail of OPRM1. Interacts also with SDIM1.
SUBCELLULAR LOCATION: Cytoplasm. Cell membrane. Note=Cytoplasmic according to PubMed:18837411 and membrane-associated according to PubMed:16542645.
TISSUE SPECIFICITY: Expressed in heart, pancreas and skeletal muscle, and to a lesser extent in brain, placenta and liver.
INDUCTION: By heat shock.
SIMILARITY: Contains 1 J domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 38.92 RPKM in Cells - Cultured fibroblasts
Total median expression: 542.91 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -41.20172-0.240 Picture PostScript Text
3' UTR -345.601717-0.201 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002939 - DnaJ_C
IPR001623 - DnaJ_N
IPR018253 - Heat_shock_DnaJ_CS
IPR008971 - HSP40/DnaJ_pept-bd
IPR003095 - Hsp_DnaJ

Pfam Domains:
PF00226 - DnaJ domain
PF01556 - DnaJ C terminal domain

ModBase Predicted Comparative 3D Structure on Q9UDY4
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
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Protein SequenceProtein SequenceProtein SequenceProtein SequenceProtein SequenceProtein Sequence
AlignmentAlignmentAlignmentAlignmentAlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001671 ATPase activator activity
GO:0005515 protein binding
GO:0051082 unfolded protein binding
GO:0051087 chaperone binding

Biological Process:
GO:0006457 protein folding
GO:0006986 response to unfolded protein
GO:0009408 response to heat
GO:0032781 positive regulation of ATPase activity

Cellular Component:
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  DQ894333 - Synthetic construct Homo sapiens clone IMAGE:100008793; FLH169802.01L; RZPDo839G0495D DnaJ (Hsp40) homolog, subfamily B, member 4 (DNAJB4) gene, encodes complete protein.
DQ891154 - Synthetic construct clone IMAGE:100003784; FLH169806.01X; RZPDo839G0496D DnaJ (Hsp40) homolog, subfamily B, member 4 (DNAJB4) gene, encodes complete protein.
AK297985 - Homo sapiens cDNA FLJ50816 complete cds, highly similar to DnaJ homolog subfamily B member 4.
LF206371 - JP 2014500723-A/13874: Polycomb-Associated Non-Coding RNAs.
MA441948 - JP 2018138019-A/13874: Polycomb-Associated Non-Coding RNAs.
LF213876 - JP 2014500723-A/21379: Polycomb-Associated Non-Coding RNAs.
MA449453 - JP 2018138019-A/21379: Polycomb-Associated Non-Coding RNAs.
U40992 - Homo sapiens heat shock protein hsp40 homolog mRNA, complete cds.
AK313205 - Homo sapiens cDNA, FLJ93705, Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 4 (DNAJB4),mRNA.
AB209922 - Homo sapiens mRNA for DnaJ (Hsp40) homolog, subfamily B, member 4 variant protein.
BC034721 - Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 4, mRNA (cDNA clone MGC:17027 IMAGE:4340658), complete cds.
CU689952 - Synthetic construct Homo sapiens gateway clone IMAGE:100018136 5' read DNAJB4 mRNA.
AB463572 - Synthetic construct DNA, clone: pF1KB5677, Homo sapiens DNAJB4 gene for DnaJ (Hsp40) homolog, subfamily B member 4, without stop codon, in Flexi system.
KJ893222 - Synthetic construct Homo sapiens clone ccsbBroadEn_02616 DNAJB4 gene, encodes complete protein.
LF353608 - JP 2014500723-A/161111: Polycomb-Associated Non-Coding RNAs.
MA589185 - JP 2018138019-A/161111: Polycomb-Associated Non-Coding RNAs.
LF353607 - JP 2014500723-A/161110: Polycomb-Associated Non-Coding RNAs.
MA589184 - JP 2018138019-A/161110: Polycomb-Associated Non-Coding RNAs.
LF353603 - JP 2014500723-A/161106: Polycomb-Associated Non-Coding RNAs.
MA589180 - JP 2018138019-A/161106: Polycomb-Associated Non-Coding RNAs.
LF353602 - JP 2014500723-A/161105: Polycomb-Associated Non-Coding RNAs.
MA589179 - JP 2018138019-A/161105: Polycomb-Associated Non-Coding RNAs.
LF353601 - JP 2014500723-A/161104: Polycomb-Associated Non-Coding RNAs.
MA589178 - JP 2018138019-A/161104: Polycomb-Associated Non-Coding RNAs.
LF353599 - JP 2014500723-A/161102: Polycomb-Associated Non-Coding RNAs.
MA589176 - JP 2018138019-A/161102: Polycomb-Associated Non-Coding RNAs.
JD074329 - Sequence 55353 from Patent EP1572962.
JD237283 - Sequence 218307 from Patent EP1572962.
JD225986 - Sequence 207010 from Patent EP1572962.
LF353597 - JP 2014500723-A/161100: Polycomb-Associated Non-Coding RNAs.
MA589174 - JP 2018138019-A/161100: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: B2R824, DNAJW, DNJB4_HUMAN, ENST00000370763.1, ENST00000370763.2, ENST00000370763.3, ENST00000370763.4, ENST00000370763.5, HLJ1, NM_007034, Q13431, Q9UDY4, uc001dij.1, uc001dij.2, uc001dij.3, uc001dij.4, uc001dij.5
UCSC ID: ENST00000370763.6
RefSeq Accession: NM_007034
Protein: Q9UDY4 (aka DNJB4_HUMAN or DJB4_HUMAN)
CCDS: CCDS684.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.