Human Gene HJV (ENST00000475797.1) from GENCODE V44
  Description: Homo sapiens hemojuvelin BMP co-receptor (HJV), transcript variant d, mRNA. (from RefSeq NM_213652)
RefSeq Summary (NM_213652): The product of this gene is involved in iron metabolism. It may be a component of the signaling pathway which activates hepcidin or it may act as a modulator of hepcidin expression. It could also represent the cellular receptor for hepcidin. Two uORFs in the 5' UTR negatively regulate the expression and activity of the encoded protein. Alternatively spliced transcript variants encoding different isoforms have been identified for this gene. Defects in this gene are the cause of hemochromatosis type 2A, also called juvenile hemochromatosis (JH). JH is an early-onset autosomal recessive disorder due to severe iron overload resulting in hypogonadotrophic hypogonadism, hepatic fibrosis or cirrhosis and cardiomyopathy, occurring typically before age of 30. [provided by RefSeq, Oct 2015].
Gencode Transcript: ENST00000475797.1
Gencode Gene: ENSG00000168509.20
Transcript (Including UTRs)
   Position: hg38 chr1:146,017,468-146,021,734 Size: 4,267 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg38 chr1:146,018,077-146,018,679 Size: 603 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathways
Other NamesGeneReviewsMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:146,017,468-146,021,734)mRNA (may differ from genome)Protein (200 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblEntrez GeneExonPrimerGencodeGeneCardsMalacards
MGIneXtProtOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RGMC_HUMAN
DESCRIPTION: RecName: Full=Hemojuvelin; AltName: Full=Hemochromatosis type 2 protein; AltName: Full=RGM domain family member C; Flags: Precursor;
FUNCTION: Member of the repulsive guidance molecule (RGM) family. Involved in iron metabolism. Acts as a bone morphogenetic protein (BMP) coreceptor (By similarity). Enhancement of BMP signaling regulates hepcidin (HAMP) expression and iron metabolism (By similarity). May cooperate with hepcidin to restrict iron absorption in the gut. Could represent the cellular receptor for hepcidin.
SUBUNIT: Interacts with BMP2 and BMP4 (By similarity). Interacts with BMPR1B. Interacts with TMPRSS6.
SUBCELLULAR LOCATION: Cell membrane; Lipid-anchor, GPI-anchor (By similarity).
TISSUE SPECIFICITY: Adult and fetal liver, heart, and skeletal muscle.
DISEASE: Defects in HFE2 are the cause of hemochromatosis type 2A (HFE2A) [MIM:602390]; also known as juvenile hemochromatosis (JH). HFE2A is an early-onset autosomal recessive disorder due to severe iron overload resulting in hypogonadotrophic hypogonadism, hepatic fibrosis or cirrhosis and cardiomyopathy, occurring typically before age of 30. It is the consequence of intestinal iron hyperabsorption associated with macrophages that do not load iron. Deleterious mutations of HFE2 reduced HAMP (hepcidin) levels despite iron overload, which normally induces HAMP expression.
SIMILARITY: Belongs to the repulsive guidance molecule (RGM) family.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/HFE2";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 105.07 RPKM in Muscle - Skeletal
Total median expression: 183.43 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -58.20169-0.344 Picture PostScript Text
3' UTR -153.60609-0.252 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009496 - RGM_C
IPR010536 - RGM_N

Pfam Domains:
PF06534 - Repulsive guidance molecule (RGM) C-terminus
PF06535 - Repulsive guidance molecule (RGM) N-terminus

ModBase Predicted Comparative 3D Structure on Q6ZVN8
FrontTopSide
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005102 receptor binding
GO:0005515 protein binding
GO:0015026 coreceptor activity
GO:0036122 BMP binding
GO:1990459 transferrin receptor binding
GO:0098821 BMP receptor activity

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0006879 cellular iron ion homeostasis
GO:0016540 protein autoprocessing
GO:0030509 BMP signaling pathway
GO:0030514 negative regulation of BMP signaling pathway
GO:0032924 activin receptor signaling pathway
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0055072 iron ion homeostasis
GO:0071773 cellular response to BMP stimulus

Cellular Component:
GO:0005615 extracellular space
GO:0005886 plasma membrane
GO:0009986 cell surface
GO:0016020 membrane
GO:0031225 anchored component of membrane
GO:0070724 BMP receptor complex
GO:0098797 plasma membrane protein complex
GO:1990712 HFE-transferrin receptor complex


-  Descriptions from all associated GenBank mRNAs
  BC085604 - Homo sapiens hemochromatosis type 2 (juvenile), mRNA (cDNA clone MGC:105051 IMAGE:6198223), complete cds.
AK092692 - Homo sapiens cDNA FLJ35373 fis, clone SKMUS2002077.
AX747673 - Sequence 1198 from Patent EP1308459.
AK096905 - Homo sapiens cDNA FLJ39586 fis, clone SKMUS2007740.
LF206246 - JP 2014500723-A/13749: Polycomb-Associated Non-Coding RNAs.
MA441823 - JP 2018138019-A/13749: Polycomb-Associated Non-Coding RNAs.
AK223575 - Homo sapiens mRNA, hemojuvelin isoform a variant, clone: FCC129E08.
AK124273 - Homo sapiens cDNA FLJ42279 fis, clone TLIVE2002690.
AK092682 - Homo sapiens cDNA FLJ35363 fis, clone SKMUS2000679.
AX747669 - Sequence 1194 from Patent EP1308459.
BC017926 - Homo sapiens hemochromatosis type 2 (juvenile), mRNA (cDNA clone IMAGE:4292862), complete cds.
AK292742 - Homo sapiens cDNA FLJ77948 complete cds.
JD102578 - Sequence 83602 from Patent EP1572962.
JD485067 - Sequence 466091 from Patent EP1572962.
JD141854 - Sequence 122878 from Patent EP1572962.
AK315852 - Homo sapiens cDNA, FLJ79501 complete cds, highly similar to Hemojuvelin precursor.
JD552949 - Sequence 533973 from Patent EP1572962.
JD311209 - Sequence 292233 from Patent EP1572962.
AK290831 - Homo sapiens cDNA FLJ75358 complete cds, highly similar to Homo sapiens hemochromatosis type 2 (juvenile) (HFE2), transcript variant b, mRNA.
JD331518 - Sequence 312542 from Patent EP1572962.
AY372521 - Homo sapiens hemochromatosis type 2 juvenile protein precursor isoform a (HFE2) mRNA, complete cds.
HQ447765 - Synthetic construct Homo sapiens clone IMAGE:100071096; CCSB012873_01 hemochromatosis type 2 (juvenile) (HFE2) gene, encodes complete protein.
KJ895623 - Synthetic construct Homo sapiens clone ccsbBroadEn_05017 HFE2 gene, encodes complete protein.
KR711188 - Synthetic construct Homo sapiens clone CCSBHm_00021025 HFE2 (HFE2) mRNA, encodes complete protein.
KR711189 - Synthetic construct Homo sapiens clone CCSBHm_00021026 HFE2 (HFE2) mRNA, encodes complete protein.
KR711190 - Synthetic construct Homo sapiens clone CCSBHm_00021027 HFE2 (HFE2) mRNA, encodes complete protein.
KR711191 - Synthetic construct Homo sapiens clone CCSBHm_00021028 HFE2 (HFE2) mRNA, encodes complete protein.
LF352631 - JP 2014500723-A/160134: Polycomb-Associated Non-Coding RNAs.
MA588208 - JP 2018138019-A/160134: Polycomb-Associated Non-Coding RNAs.
CU676114 - Synthetic construct Homo sapiens gateway clone IMAGE:100022046 5' read HFE2 mRNA.
LF352630 - JP 2014500723-A/160133: Polycomb-Associated Non-Coding RNAs.
MA588207 - JP 2018138019-A/160133: Polycomb-Associated Non-Coding RNAs.
LF211914 - JP 2014500723-A/19417: Polycomb-Associated Non-Coding RNAs.
MA447491 - JP 2018138019-A/19417: Polycomb-Associated Non-Coding RNAs.
JD273985 - Sequence 255009 from Patent EP1572962.
JD047346 - Sequence 28370 from Patent EP1572962.
JD317034 - Sequence 298058 from Patent EP1572962.
JD159883 - Sequence 140907 from Patent EP1572962.
JD389594 - Sequence 370618 from Patent EP1572962.
JD069351 - Sequence 50375 from Patent EP1572962.
JD187239 - Sequence 168263 from Patent EP1572962.
JD164791 - Sequence 145815 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q6ZVN8 (Reactome details) participates in the following event(s):

R-HSA-374692 Neogenin binds repulsive guidance molecules (RGDs)
R-HSA-373752 Netrin-1 signaling
R-HSA-422475 Axon guidance
R-HSA-1266738 Developmental Biology

-  Other Names for This Gene
  Alternate Gene Symbols: B1ALI7, HFE2, NM_213652, Q2PQ63, Q6IMF6, Q6ZVN8, Q8NAH2, Q8WVJ5, RGMC, RGMC_HUMAN, uc001enl.1, uc001enl.2, uc001enl.3
UCSC ID: ENST00000475797.1
RefSeq Accession: NM_213652
Protein: Q6ZVN8 (aka RGMC_HUMAN)
CCDS: CCDS72877.1

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene HJV:
jh (Juvenile Hemochromatosis)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.