Human Gene AIDA (ENST00000340020.11) from GENCODE V44
  Description: Homo sapiens axin interactor, dorsalization associated (AIDA), mRNA. (from RefSeq NM_022831)
Gencode Transcript: ENST00000340020.11
Gencode Gene: ENSG00000186063.13
Transcript (Including UTRs)
   Position: hg38 chr1:222,668,013-222,712,491 Size: 44,479 Total Exon Count: 10 Strand: -
Coding Region
   Position: hg38 chr1:222,669,893-222,712,317 Size: 42,425 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:222,668,013-222,712,491)mRNA (may differ from genome)Protein (306 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMGIneXtProtOMIM
PubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: AIDA_HUMAN
DESCRIPTION: RecName: Full=Axin interactor, dorsalization-associated protein; AltName: Full=Axin interaction partner and dorsalization antagonist;
FUNCTION: Acts as a ventralizing factor during embryogenesis. Inhibits axin-mediated JNK activation by binding axin and disrupting axin homodimerization. This in turn antagonizes a Wnt/beta-catenin-independent dorsalization pathway activated by AXIN/JNK-signaling (By similarity).
SUBUNIT: Interacts with AXIN1 (By similarity).
TISSUE SPECIFICITY: Widely expressed in adult tissues, with highest expression in the heart and skeletal muscle.
SIMILARITY: Belongs to the AIDA family.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

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-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.34 RPKM in Adipose - Visceral (Omentum)
Total median expression: 340.35 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -80.50174-0.463 Picture PostScript Text
3' UTR -465.201880-0.247 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015006 - AIDA
IPR025939 - Aida_C
IPR023421 - AIDA_N

Pfam Domains:
PF08910 - Aida N-terminus
PF14186 - Cytoskeletal adhesion

ModBase Predicted Comparative 3D Structure on Q96BJ3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0019904 protein domain specific binding
GO:0035091 phosphatidylinositol binding

Biological Process:
GO:0007275 multicellular organism development
GO:0009953 dorsal/ventral pattern formation
GO:0043496 regulation of protein homodimerization activity
GO:0043508 negative regulation of JUN kinase activity
GO:0046329 negative regulation of JNK cascade
GO:0048264 determination of ventral identity

Cellular Component:
GO:0005575 cellular_component
GO:0005737 cytoplasm
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  BC067805 - Homo sapiens axin interactor, dorsalization associated, mRNA (cDNA clone MGC:87271 IMAGE:5298783), complete cds.
BC043142 - Homo sapiens axin interactor, dorsalization associated, mRNA (cDNA clone IMAGE:5297142), complete cds.
AL833718 - Homo sapiens mRNA; cDNA DKFZp666C185 (from clone DKFZp666C185).
AK022868 - Homo sapiens cDNA FLJ12806 fis, clone NT2RP2002235.
LF208013 - JP 2014500723-A/15516: Polycomb-Associated Non-Coding RNAs.
MA443590 - JP 2018138019-A/15516: Polycomb-Associated Non-Coding RNAs.
BC015535 - Homo sapiens axin interactor, dorsalization associated, mRNA (cDNA clone MGC:9516 IMAGE:3903579), complete cds.
AK301870 - Homo sapiens cDNA FLJ53110 complete cds.
AK289865 - Homo sapiens cDNA FLJ78391 complete cds.
KJ894585 - Synthetic construct Homo sapiens clone ccsbBroadEn_03979 AIDA gene, encodes complete protein.
BC171848 - Homo sapiens axin interactor, dorsalization associated, mRNA (cDNA clone IMAGE:9054502), partial cds.
AF131838 - Homo sapiens clone 25107 mRNA sequence.
JD519259 - Sequence 500283 from Patent EP1572962.
JD299199 - Sequence 280223 from Patent EP1572962.
JD297205 - Sequence 278229 from Patent EP1572962.
LF370980 - JP 2014500723-A/178483: Polycomb-Associated Non-Coding RNAs.
MA606557 - JP 2018138019-A/178483: Polycomb-Associated Non-Coding RNAs.
JD092580 - Sequence 73604 from Patent EP1572962.
JD292128 - Sequence 273152 from Patent EP1572962.
JD522674 - Sequence 503698 from Patent EP1572962.
JD550913 - Sequence 531937 from Patent EP1572962.
JD515681 - Sequence 496705 from Patent EP1572962.
JD092609 - Sequence 73633 from Patent EP1572962.
JD355847 - Sequence 336871 from Patent EP1572962.
JD369959 - Sequence 350983 from Patent EP1572962.
JD280294 - Sequence 261318 from Patent EP1572962.
JD394616 - Sequence 375640 from Patent EP1572962.
LF370978 - JP 2014500723-A/178481: Polycomb-Associated Non-Coding RNAs.
MA606555 - JP 2018138019-A/178481: Polycomb-Associated Non-Coding RNAs.
LF370977 - JP 2014500723-A/178480: Polycomb-Associated Non-Coding RNAs.
MA606554 - JP 2018138019-A/178480: Polycomb-Associated Non-Coding RNAs.
AJ012494 - Homo sapiens mRNA activated in tumor suppression, clone TSAP14.
JD372305 - Sequence 353329 from Patent EP1572962.
LF370976 - JP 2014500723-A/178479: Polycomb-Associated Non-Coding RNAs.
MA606553 - JP 2018138019-A/178479: Polycomb-Associated Non-Coding RNAs.
JD484935 - Sequence 465959 from Patent EP1572962.
JD196176 - Sequence 177200 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A8K1F0, AIDA_HUMAN, C1orf80, ENST00000340020.1, ENST00000340020.10, ENST00000340020.2, ENST00000340020.3, ENST00000340020.4, ENST00000340020.5, ENST00000340020.6, ENST00000340020.7, ENST00000340020.8, ENST00000340020.9, NM_022831, Q49A81, Q5JRA4, Q658P1, Q96BJ3, Q9H9E8, uc001hnn.1, uc001hnn.2, uc001hnn.3, uc001hnn.4, uc001hnn.5
UCSC ID: ENST00000340020.11
RefSeq Accession: NM_022831
Protein: Q96BJ3 (aka AIDA_HUMAN)
CCDS: CCDS1533.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.