Human Gene ZNF365 (ENST00000395254.8) from GENCODE V44
  Description: Homo sapiens zinc finger protein 365 (ZNF365), transcript variant A, mRNA. (from RefSeq NM_014951)
RefSeq Summary (NM_014951): This gene encodes a zinc finger protein that may play a role in the repair of DNA damage and maintenance of genome stability. The N-terminal C2H2 zinc finger motif is required to form a protein complex with PARP1 and MRE11, which are known to be involved in the restart of stalled DNA replication forks. A mutation in this gene may be associated with breast cancer susceptibility. [provided by RefSeq, Mar 2020].
Gencode Transcript: ENST00000395254.8
Gencode Gene: ENSG00000138311.18
Transcript (Including UTRs)
   Position: hg38 chr10:62,374,369-62,402,450 Size: 28,082 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg38 chr10:62,376,194-62,399,789 Size: 23,596 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:62,374,369-62,402,450)mRNA (may differ from genome)Protein (407 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCLynxMalacardsMGIneXtProtOMIM
PubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ZN365_HUMAN
DESCRIPTION: RecName: Full=Protein ZNF365; AltName: Full=Protein su48;
SUBUNIT: Homodimer. Interacts with NDE1 and NDEL1. Does not interact with TUBG1.
INTERACTION: Q9NXR1:NDE1; NbExp=4; IntAct=EBI-941182, EBI-941227;
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, centrosome. Note=localizes to the centrosome at all stages of the cell cycle.
TISSUE SPECIFICITY: Isoform 1 is expressed in brain. Isoform 2 is expressed in placenta and at low level in lung and liver. Isoform 3 is expressed in kidney and pancreas.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR (By similarity).
SEQUENCE CAUTION: Sequence=AAH17841.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=BAA74867.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ZNF365
Diseases sorted by gene-association score: nephrolithiasis, uric acid* (592), nephrolithiasis (26), narcolepsy* (11)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.13 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 92.32 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -39.30103-0.382 Picture PostScript Text
3' UTR -694.602661-0.261 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015880 - Znf_C2H2-like

ModBase Predicted Comparative 3D Structure on Q70YC5
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0042802 identical protein binding
GO:0046872 metal ion binding

Biological Process:
GO:0000723 telomere maintenance
GO:0007399 nervous system development
GO:0010569 regulation of double-strand break repair via homologous recombination
GO:0010977 negative regulation of neuron projection development
GO:0021687 cerebellar molecular layer morphogenesis
GO:0048714 positive regulation of oligodendrocyte differentiation
GO:0060997 dendritic spine morphogenesis

Cellular Component:
GO:0005737 cytoplasm
GO:0005815 microtubule organizing center
GO:0005856 cytoskeleton
GO:0043231 intracellular membrane-bounded organelle


-  Descriptions from all associated GenBank mRNAs
  BX647853 - Homo sapiens mRNA; cDNA DKFZp313H2316 (from clone DKFZp313H2316).
BX647904 - Homo sapiens mRNA; cDNA DKFZp686B0712 (from clone DKFZp686B0712).
AB020651 - Homo sapiens KIAA0844 mRNA for KIAA0844 protein.
AJ505148 - Homo sapiens mRNA for zinc finger protein (ZNF365B gene).
AJ505149 - Homo sapiens mRNA for zinc finger protein (ZNF365C gene).
BC035049 - Homo sapiens zinc finger protein 365, mRNA (cDNA clone IMAGE:5264678), complete cds.
BC060817 - Homo sapiens zinc finger protein 365, mRNA (cDNA clone IMAGE:5261383), complete cds.
BC017841 - Homo sapiens zinc finger protein 365, mRNA (cDNA clone IMAGE:4691885), partial cds.
BC070073 - Homo sapiens zinc finger protein 365, mRNA (cDNA clone IMAGE:4821260).
AJ505147 - Homo sapiens mRNA for zinc finger protein (ZNF365A gene).
AK289808 - Homo sapiens cDNA FLJ75327 complete cds, highly similar to Homo sapiens mRNA for zinc finger protein (ZNF365A gene).
AK289515 - Homo sapiens cDNA FLJ78722 complete cds, highly similar to Homo sapiens zinc finger protein 365 (ZNF365), transcript variant A, mRNA.
AB384010 - Synthetic construct DNA, clone: pF1KSDA0844, Homo sapiens ZNF365 gene for zinc finger protein 365, complete cds, without stop codon, in Flexi system.
BC152972 - Synthetic construct Homo sapiens clone IMAGE:100016211, MGC:184223 zinc finger protein 365 (ZNF365) mRNA, encodes complete protein.
BC156628 - Synthetic construct Homo sapiens clone IMAGE:100062075, MGC:190162 zinc finger protein 365 (ZNF365) mRNA, encodes complete protein.
JD201026 - Sequence 182050 from Patent EP1572962.
JD168875 - Sequence 149899 from Patent EP1572962.
JD339767 - Sequence 320791 from Patent EP1572962.
JD563357 - Sequence 544381 from Patent EP1572962.
JD062544 - Sequence 43568 from Patent EP1572962.
JD082591 - Sequence 63615 from Patent EP1572962.
JD313178 - Sequence 294202 from Patent EP1572962.
JD494672 - Sequence 475696 from Patent EP1572962.
JD284923 - Sequence 265947 from Patent EP1572962.
JD087856 - Sequence 68880 from Patent EP1572962.
JD418877 - Sequence 399901 from Patent EP1572962.
JD499886 - Sequence 480910 from Patent EP1572962.
JD398900 - Sequence 379924 from Patent EP1572962.
JD563443 - Sequence 544467 from Patent EP1572962.
JD501898 - Sequence 482922 from Patent EP1572962.
JD235773 - Sequence 216797 from Patent EP1572962.
JD298715 - Sequence 279739 from Patent EP1572962.
JD185220 - Sequence 166244 from Patent EP1572962.
JD385675 - Sequence 366699 from Patent EP1572962.
JD109964 - Sequence 90988 from Patent EP1572962.
JD061438 - Sequence 42462 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A8K0F0, ENST00000395254.1, ENST00000395254.2, ENST00000395254.3, ENST00000395254.4, ENST00000395254.5, ENST00000395254.6, ENST00000395254.7, KIAA0844, NM_014951, O94930, Q05D75, Q5HYE6, Q68SG8, Q6NSK2, Q6P9D4, Q70YC5, Q70YC6, Q70YC7, uc001jlz.1, uc001jlz.2, uc001jlz.3, uc001jlz.4, uc001jlz.5, uc001jlz.6, ZN365_HUMAN
UCSC ID: ENST00000395254.8
RefSeq Accession: NM_014951
Protein: Q70YC5 (aka ZN365_HUMAN)
CCDS: CCDS31209.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.