Human Gene RUFY2 (ENST00000342616.4) from GENCODE V44
  Description: RUN and FYVE domain containing 2 (from HGNC RUFY2)
Gencode Transcript: ENST00000342616.4
Gencode Gene: ENSG00000204130.14
Transcript (Including UTRs)
   Position: hg38 chr10:68,393,764-68,407,277 Size: 13,514 Total Exon Count: 6 Strand: -


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:68,393,764-68,407,277)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblExonPrimerGencodeHGNCLynx
PubMedWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.26 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 232.60 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK000925 - Homo sapiens cDNA FLJ10063 fis, clone HEMBA1001446.
AF461266 - Homo sapiens RUFY2 (RUFY2) mRNA, complete cds.
AB040970 - Homo sapiens mRNA for KIAA1537 protein, partial cds.
AK127019 - Homo sapiens cDNA FLJ45075 fis, clone BRAWH3027533, highly similar to RUN and FYVE domain-containing protein 2.
AF411980 - Homo sapiens Run- and FYVE-domain containing protein Rabip4R mRNA, complete cds.
AB384229 - Synthetic construct DNA, clone: pF1KSDA1537, Homo sapiens RUFY2 gene for RUN and FYVE domain-containing protein 2, complete cds, without stop codon, in Flexi system.
BC020659 - Homo sapiens cDNA clone IMAGE:4717881, containing frame-shift errors.
BC041092 - Homo sapiens RUN and FYVE domain containing 2, mRNA (cDNA clone MGC:46077 IMAGE:5731891), complete cds.
LF384642 - JP 2014500723-A/192145: Polycomb-Associated Non-Coding RNAs.
MA620219 - JP 2018138019-A/192145: Polycomb-Associated Non-Coding RNAs.
AK294211 - Homo sapiens cDNA FLJ58796 complete cds, highly similar to RUN and FYVE domain-containing protein 2.
HQ448515 - Synthetic construct Homo sapiens clone IMAGE:100071949; CCSB011211_01 RUN and FYVE domain containing 2 (RUFY2) gene, encodes complete protein.
KJ894233 - Synthetic construct Homo sapiens clone ccsbBroadEn_03627 RUFY2 gene, encodes complete protein.
AY528716 - Homo sapiens antigen MU-RMS-40.17 (RUFY2) mRNA, partial cds.
CU691950 - Synthetic construct Homo sapiens gateway clone IMAGE:100021176 5' read RUFY2 mRNA.
BC062660 - Homo sapiens RUN and FYVE domain containing 2, mRNA (cDNA clone IMAGE:6716008).
LF322658 - JP 2014500723-A/130161: Polycomb-Associated Non-Coding RNAs.
MA558235 - JP 2018138019-A/130161: Polycomb-Associated Non-Coding RNAs.
LF322657 - JP 2014500723-A/130160: Polycomb-Associated Non-Coding RNAs.
MA558234 - JP 2018138019-A/130160: Polycomb-Associated Non-Coding RNAs.
LF322656 - JP 2014500723-A/130159: Polycomb-Associated Non-Coding RNAs.
MA558233 - JP 2018138019-A/130159: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: AK000925, ENST00000342616.1, ENST00000342616.2, ENST00000342616.3, uc001joe.1, uc001joe.2, uc001joe.3, uc001joe.4
UCSC ID: ENST00000342616.4
RefSeq Accession: NR_103476

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.