Human Gene RBM7 (ENST00000540163.5) from GENCODE V44
Description: Homo sapiens RNA binding motif protein 7 (RBM7), transcript variant 2, mRNA. (from RefSeq NM_016090)
Gencode Transcript: ENST00000540163.5
Gencode Gene: ENSG00000076053.12
Transcript (Including UTRs)
Position: hg38 chr11:114,400,030-114,410,607 Size: 10,578 Total Exon Count: 5 Strand: +
Coding Region
Position: hg38 chr11:114,400,672-114,407,807 Size: 7,136 Coding Exon Count: 5
Data last updated at UCSC: 2023-08-18 00:09:47
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: RBM7_HUMAN
DESCRIPTION: RecName: Full=RNA-binding protein 7; AltName: Full=RNA-binding motif protein 7;
FUNCTION: Possible involved in germ cell RNA processing and meiosis.TISSUE SPECIFICITY: Ubiquitous.SIMILARITY: Contains 1 RRM (RNA recognition motif) domain.
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
Press "+" in the title bar above to open this section.
mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR012677 - Nucleotide-bd_a/b_plait
IPR000504 - RRM_dom
Pfam Domains: PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
ModBase Predicted Comparative 3D Structure on Q9Y580
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
CU687143 - Synthetic construct Homo sapiens gateway clone IMAGE:100022757 3' read C11orf71 mRNA.AK312619 - Homo sapiens cDNA, FLJ93002, Homo sapiens RNA binding motif protein 7 (RBM7), mRNA.AK002015 - Homo sapiens cDNA FLJ11153 fis, clone PLACE1006917, weakly similar to HSH49 PROTEIN.AB209753 - Homo sapiens mRNA for Hypothetical protein FLJ11153 variant protein.AK225667 - Homo sapiens mRNA for RNA binding motif protein 7 variant, clone: STM05124.AF156098 - Homo sapiens RNA binding motif protein 7 (RBM7) mRNA, complete cds.BC034381 - Homo sapiens RNA binding motif protein 7, mRNA (cDNA clone MGC:34253 IMAGE:5180771), complete cds.AK225615 - Homo sapiens mRNA for RNA binding motif protein 7 variant, clone: REC06221.BC070262 - Homo sapiens RNA binding motif protein 7, mRNA (cDNA clone MGC:88249 IMAGE:4619267), complete cds.BC013320 - Homo sapiens RNA binding motif protein 7, mRNA (cDNA clone IMAGE:4099471), containing frame-shift errors.AB464181 - Synthetic construct DNA, clone: pF1KB6355, Homo sapiens RBM7 gene for RNA binding motif protein 7, without stop codon, in Flexi system.HQ447093 - Synthetic construct Homo sapiens clone IMAGE:100070376; CCSB008444_01 RNA binding motif protein 7 (RBM7) gene, encodes complete protein.KJ892948 - Synthetic construct Homo sapiens clone ccsbBroadEn_02342 RBM7 gene, encodes complete protein.CU689870 - Synthetic construct Homo sapiens gateway clone IMAGE:100016930 5' read RBM7 mRNA.JD316926 - Sequence 297950 from Patent EP1572962.JD037710 - Sequence 18734 from Patent EP1572962.JD504111 - Sequence 485135 from Patent EP1572962.JD047791 - Sequence 28815 from Patent EP1572962.JD310463 - Sequence 291487 from Patent EP1572962.JD562916 - Sequence 543940 from Patent EP1572962.JD280212 - Sequence 261236 from Patent EP1572962.JD242841 - Sequence 223865 from Patent EP1572962.JD064537 - Sequence 45561 from Patent EP1572962.JD064538 - Sequence 45562 from Patent EP1572962.JD333258 - Sequence 314282 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: B2R6K8, ENST00000540163.1, ENST00000540163.2, ENST00000540163.3, ENST00000540163.4, NM_016090, Q9NUT4, Q9Y580, RBM7_HUMAN, uc001pov.1, uc001pov.2, uc001pov.3, uc001pov.4, uc001pov.5UCSC ID: ENST00000540163.5RefSeq Accession: NM_016090
Protein: Q9Y580
(aka RBM7_HUMAN)
CCDS: CCDS8370.1 , CCDS66233.1
Methods, Credits, and Use Restrictions
Click here
for details on how this gene model was made and data restrictions if any.