Human Gene FGFR1OP2 (ENST00000327214.5) from GENCODE V44
  Description: Homo sapiens FGFR1 oncogene partner 2 (FGFR1OP2), transcript variant 2, mRNA. (from RefSeq NM_001171887)
Gencode Transcript: ENST00000327214.5
Gencode Gene: ENSG00000111790.14
Transcript (Including UTRs)
   Position: hg38 chr12:26,938,500-26,966,650 Size: 28,151 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg38 chr12:26,954,159-26,964,733 Size: 10,575 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:26,938,500-26,966,650)mRNA (may differ from genome)Protein (215 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FGOP2_HUMAN
DESCRIPTION: RecName: Full=FGFR1 oncogene partner 2;
FUNCTION: May be involved in wound healing pathway (By similarity).
SUBCELLULAR LOCATION: Cytoplasm (By similarity).
TISSUE SPECIFICITY: Expressed in bone marrow, spleen and thymus.
DISEASE: Note=A chromosomal aberration involving FGFR1OP2 may be a cause of stem cell myeloproliferative disorder (MPD). Insertion ins(12;8)(p11;p11p22) with FGFR1. MPD is characterized by myeloid hyperplasia, eosinophilia and T-cell or B-cell lymphoblastic lymphoma. In general it progresses to acute myeloid leukemia. The fusion protein FGFR1OP2-FGFR1 may exhibit constitutive kinase activity and be responsible for the transforming activity.
SIMILARITY: Belongs to the SIKE family.
SEQUENCE CAUTION: Sequence=AAF29087.1; Type=Frameshift; Positions=61, 67, 72, 91; Sequence=CAB56012.1; Type=Frameshift; Positions=189;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: FGFR1OP2
Diseases sorted by gene-association score: 8p11 myeloproliferative syndrome (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 25.73 RPKM in Ovary
Total median expression: 668.24 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -86.50225-0.384 Picture PostScript Text
3' UTR -418.101917-0.218 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008555 - SIKE

Pfam Domains:
PF05769 - SIKE family

ModBase Predicted Comparative 3D Structure on Q9NVK5
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserGenome BrowserGenome BrowserNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsemblEnsemblWormBase 
Protein SequenceProtein SequenceProtein SequenceProtein SequenceProtein Sequence 
AlignmentAlignmentAlignmentAlignmentAlignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004713 protein tyrosine kinase activity
GO:0005515 protein binding
GO:0042803 protein homodimerization activity

Biological Process:
GO:0009611 response to wounding
GO:0018108 peptidyl-tyrosine phosphorylation
GO:0042060 wound healing

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK001534 - Homo sapiens cDNA FLJ10672 fis, clone NT2RP2006365.
BC032143 - Homo sapiens FGFR1 oncogene partner 2, mRNA (cDNA clone MGC:29513 IMAGE:4552774), complete cds.
AF161472 - Homo sapiens HSPC123 mRNA, complete cds.
CU689294 - Synthetic construct Homo sapiens gateway clone IMAGE:100021843 5' read FGFR1OP2 mRNA.
KJ893524 - Synthetic construct Homo sapiens clone ccsbBroadEn_02918 FGFR1OP2 gene, encodes complete protein.
AY506561 - Homo sapiens HSPC123-like protein mRNA, complete cds.
AL117608 - Homo sapiens mRNA; cDNA DKFZp564O1863 (from clone DKFZp564O1863); partial cds.
AK094888 - Homo sapiens cDNA FLJ37569 fis, clone BRCOC2002659.
JD229274 - Sequence 210298 from Patent EP1572962.
JD422186 - Sequence 403210 from Patent EP1572962.
AL117545 - Homo sapiens mRNA; cDNA DKFZp586C1423 (from clone DKFZp586C1423).
LF326513 - JP 2014500723-A/134016: Polycomb-Associated Non-Coding RNAs.
MA562090 - JP 2018138019-A/134016: Polycomb-Associated Non-Coding RNAs.
JD442776 - Sequence 423800 from Patent EP1572962.
JD314709 - Sequence 295733 from Patent EP1572962.
JD304477 - Sequence 285501 from Patent EP1572962.
JD434688 - Sequence 415712 from Patent EP1572962.
JD287937 - Sequence 268961 from Patent EP1572962.
JD053968 - Sequence 34992 from Patent EP1572962.
JD496297 - Sequence 477321 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NVK5 (Reactome details) participates in the following event(s):

R-HSA-1839031 Dimerization of cytosolic FGFR1 fusion proteins
R-HSA-1839039 Tyrosine kinase inhibitors bind and inhibit cytosolic FGFR1 fusion dimer phosphorylation
R-HSA-1839065 Phosphorylation of cytosolic FGFR1 fusion dimers
R-HSA-1839080 Activated cytosolic FGFR1 fusions bind PIK3CA
R-HSA-1839112 Phosphorylation of STAT5 by cytosolic FGFR1 fusions
R-HSA-1839094 Activated FGFR1 mutants and fusions bind PLCG1
R-HSA-1839100 p-4Y- PLCG1 dissociates from activated FGFR1 mutants and fusions
R-HSA-1839091 Cytosolic FGFR1 fusion protein-associated PI3K phosphorylates PIP2 to PIP3
R-HSA-1839098 Activated FGFR1 mutants and fusions phosphorylate PLCG1
R-HSA-1839117 Signaling by cytosolic FGFR1 fusion mutants
R-HSA-1839124 FGFR1 mutant receptor activation
R-HSA-5655302 Signaling by FGFR1 in disease
R-HSA-1226099 Signaling by FGFR in disease
R-HSA-5663202 Diseases of signal transduction
R-HSA-1643685 Disease

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000327214.1, ENST00000327214.2, ENST00000327214.3, ENST00000327214.4, FGOP2_HUMAN, HSPC123, NM_001171887, Q6R955, Q8N5L7, Q9NVK5, Q9P034, Q9UFK8, uc001rhn.1, uc001rhn.2, uc001rhn.3, uc001rhn.4
UCSC ID: ENST00000327214.5
RefSeq Accession: NM_001171887
Protein: Q9NVK5 (aka FGOP2_HUMAN)
CCDS: CCDS53767.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.