Human Gene SPATS2 (ENST00000552918.6) from GENCODE V44
Description: Homo sapiens spermatogenesis associated serine rich 2 (SPATS2), transcript variant 4, non-coding RNA. (from RefSeq NR_120663)
Gencode Transcript: ENST00000552918.6
Gencode Gene: ENSG00000123352.18
Transcript (Including UTRs)
Position: hg38 chr12:49,367,462-49,527,425 Size: 159,964 Total Exon Count: 14 Strand: +
Coding Region
Position: hg38 chr12:49,461,013-49,526,255 Size: 65,243 Coding Exon Count: 12
Data last updated at UCSC: 2023-08-18 00:09:47
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: SPAS2_HUMAN
DESCRIPTION: RecName: Full=Spermatogenesis-associated serine-rich protein 2; AltName: Full=Serine-rich spermatocytes and round spermatid 59 kDa protein; AltName: Full=p59scr;
SUBCELLULAR LOCATION: Cytoplasm (By similarity).SIMILARITY: Belongs to the SPATS2 family.SEQUENCE CAUTION: Sequence=BAB14448.1; Type=Erroneous initiation; Sequence=BAB14958.1; Type=Erroneous initiation;
Primer design for this transcript
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR009816 - DUF1387
IPR009060 - UBA-like
Pfam Domains: PF07139 - Protein of unknown function (DUF1387)
ModBase Predicted Comparative 3D Structure on Q86XZ4
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
AK095582 - Homo sapiens cDNA FLJ38263 fis, clone FCBBF3001632.BC017767 - Homo sapiens spermatogenesis associated, serine-rich 2, mRNA (cDNA clone IMAGE:4696211), with apparent retained intron.AL833614 - Homo sapiens mRNA; cDNA DKFZp686D0473 (from clone DKFZp686D0473).BC048299 - Homo sapiens spermatogenesis associated, serine-rich 2, mRNA (cDNA clone MGC:51825 IMAGE:5520818), complete cds.AK292334 - Homo sapiens cDNA FLJ77753 complete cds, highly similar to Homo sapiens spermatogenesis associated, serine-rich 2, mRNA.AK023202 - Homo sapiens cDNA FLJ13140 fis, clone NT2RP3003204.BX648916 - Homo sapiens mRNA; cDNA DKFZp686C1660 (from clone DKFZp686C1660).BC032441 - Homo sapiens spermatogenesis associated, serine-rich 2, mRNA (cDNA clone IMAGE:5163108), with apparent retained intron.JD462258 - Sequence 443282 from Patent EP1572962.JD133786 - Sequence 114810 from Patent EP1572962.AB075515 - Homo sapiens neuroblastoma cDNA, clone:Nbla00526, full insert sequence.KJ894604 - Synthetic construct Homo sapiens clone ccsbBroadEn_03998 SPATS2 gene, encodes complete protein.AK023179 - Homo sapiens cDNA FLJ13117 fis, clone NT2RP3002660.AK024678 - Homo sapiens cDNA: FLJ21025 fis, clone CAE06758.JD048298 - Sequence 29322 from Patent EP1572962.JD516344 - Sequence 497368 from Patent EP1572962.JD469451 - Sequence 450475 from Patent EP1572962.JD447937 - Sequence 428961 from Patent EP1572962.JD442498 - Sequence 423522 from Patent EP1572962.JD524126 - Sequence 505150 from Patent EP1572962.JD294456 - Sequence 275480 from Patent EP1572962.JD278377 - Sequence 259401 from Patent EP1572962.JD533324 - Sequence 514348 from Patent EP1572962.JD208753 - Sequence 189777 from Patent EP1572962.JD168580 - Sequence 149604 from Patent EP1572962.JD350212 - Sequence 331236 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: A8K8G9, ENST00000552918.1, ENST00000552918.2, ENST00000552918.3, ENST00000552918.4, ENST00000552918.5, Nbla00526, NR_120663, Q86XZ4, Q9H7D4, Q9H8Y7, Q9H8Z8, SCR59, SPAS2_HUMAN, SPATA10, uc001rud.1, uc001rud.2, uc001rud.3, uc001rud.4UCSC ID: ENST00000552918.6RefSeq Accession: NM_023071
Protein: Q86XZ4
(aka SPAS2_HUMAN)
CCDS: CCDS31794.1
Methods, Credits, and Use Restrictions
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