Human Gene IKBIP (ENST00000342502.6) from GENCODE V44
  Description: Homo sapiens IKBKB interacting protein (IKBIP), transcript variant 2, mRNA. (from RefSeq NM_201612)
Gencode Transcript: ENST00000342502.6
Gencode Gene: ENSG00000166130.15
Transcript (Including UTRs)
   Position: hg38 chr12:98,613,405-98,645,113 Size: 31,709 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg38 chr12:98,613,585-98,644,701 Size: 31,117 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:98,613,405-98,645,113)mRNA (may differ from genome)Protein (350 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMGIneXtProtOMIM
PubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IKIP_HUMAN
DESCRIPTION: RecName: Full=Inhibitor of nuclear factor kappa-B kinase-interacting protein; Short=I kappa-B kinase-interacting protein; Short=IKBKB-interacting protein; Short=IKK-interacting protein;
FUNCTION: Target of p53/TP53 with pro-apoptotic function.
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane; Single-pass membrane protein. Note=Isoform 4 deletion of the hydrophobic, or transmembrane region between AA 45-63 results in uniform distribution throughout the cell, suggesting that this region is responsible for endoplasmic reticulum localization.
TISSUE SPECIFICITY: Expressed in vein endothelial cells. Isoform 4 is expressed in lung, kidney, spleen, thymus and skeletal muscle.
INDUCTION: By X-ray irradiation.
PTM: Isoform 4 may be phosphorylated at Thr-362 by similarity with mouse isoform 1.
PTM: N-glycosylated. Isoform 4 is glycosylated at Asn-154.
MISCELLANEOUS: Shares a common promoter with APAF1 from which the 2 genes are transcribed in opposite directions.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IKBIP
Diseases sorted by gene-association score: andersen syndrome (7)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.11 RPKM in Cells - Cultured fibroblasts
Total median expression: 128.02 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -192.80412-0.468 Picture PostScript Text
3' UTR -26.20180-0.146 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR024152 - Inh_kappa-B_kinase-int

ModBase Predicted Comparative 3D Structure on Q70UQ0
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0010165 response to X-ray

Cellular Component:
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  BC051372 - Homo sapiens IKK interacting protein, mRNA (cDNA clone IMAGE:6575635), complete cds.
AJ539426 - Homo sapiens mRNA for IKIP2 (IKIP gene).
AJ539427 - Homo sapiens mRNA for IKIP3 (IKIP gene).
AK123069 - Homo sapiens cDNA FLJ41074 fis, clone 3NB692008729.
BC107572 - Homo sapiens IKK interacting protein, mRNA (cDNA clone IMAGE:3685751), partial cds.
BC029415 - Homo sapiens IKK interacting protein, mRNA (cDNA clone IMAGE:4772912), complete cds.
KJ903688 - Synthetic construct Homo sapiens clone ccsbBroadEn_13082 IKBIP gene, encodes complete protein.
CU690814 - Synthetic construct Homo sapiens gateway clone IMAGE:100022411 5' read IKIP mRNA.
AJ539425 - Homo sapiens mRNA for IKIP1 (IKIP gene).
BC058933 - Homo sapiens IKK interacting protein, mRNA (cDNA clone MGC:65157 IMAGE:5541278), complete cds.
AK055613 - Homo sapiens cDNA FLJ31051 fis, clone HSYRA2000605, weakly similar to MYOSIN HEAVY CHAIN, CLONE 203.
HQ448064 - Synthetic construct Homo sapiens clone IMAGE:100071443; CCSB011952_01 IKK interacting protein (IKIP) gene, encodes complete protein.
KJ895358 - Synthetic construct Homo sapiens clone ccsbBroadEn_04752 IKBIP gene, encodes complete protein.
CU691338 - Synthetic construct Homo sapiens gateway clone IMAGE:100021677 5' read IKIP mRNA.
JD525159 - Sequence 506183 from Patent EP1572962.
JD251227 - Sequence 232251 from Patent EP1572962.
JD218450 - Sequence 199474 from Patent EP1572962.
JD394087 - Sequence 375111 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000342502.1, ENST00000342502.2, ENST00000342502.3, ENST00000342502.4, ENST00000342502.5, IKIP, IKIP_HUMAN, NM_201612, Q6ZWH4, Q70UP9, Q70UQ0, Q86V91, Q96ND2, uc001tfv.1, uc001tfv.2, uc001tfv.3, uc001tfv.4, uc001tfv.5
UCSC ID: ENST00000342502.6
RefSeq Accession: NM_201612
Protein: Q70UQ0 (aka IKIP_HUMAN)
CCDS: CCDS9067.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.