Human Gene SNRNP35 (ENST00000527158.2) from GENCODE V44
  Description: Homo sapiens small nuclear ribonucleoprotein U11/U12 subunit 35 (SNRNP35), transcript variant 5, non-coding RNA. (from RefSeq NR_104103)
RefSeq Summary (NR_104103): The protein encoded by this gene is a homolog of the U1-snRNP binding protein. The N-terminal half contains a RNA recognition motif and the C-terminal half is rich in Arg/Asp and Arg/Glu dipeptides, which is a characteristic of a variety of splicing factors. This protein is a component of the U11/U12 small nuclear ribonucleoproteins (snRNP) that form part of the U12-type spliceosome. Alternative splicing results in multiple transcript variants encoding two distinct isoforms and representing a non-protein coding variant. [provided by RefSeq, Aug 2013].
Gencode Transcript: ENST00000527158.2
Gencode Gene: ENSG00000184209.15
Transcript (Including UTRs)
   Position: hg38 chr12:123,458,119-123,473,154 Size: 15,036 Total Exon Count: 2 Strand: +


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:123,458,119-123,473,154)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblEntrez GeneExonPrimerGencodeHGNCLynx
PubMedBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.24 RPKM in Spleen
Total median expression: 282.34 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC020829 - Homo sapiens mRNA similar to hypothetical protein FLJ21394 (cDNA clone IMAGE:4770900).
BC028485 - Homo sapiens small nuclear ribonucleoprotein 35kDa (U11/U12), mRNA (cDNA clone IMAGE:3536581).
JD477854 - Sequence 458878 from Patent EP1572962.
LF384024 - JP 2014500723-A/191527: Polycomb-Associated Non-Coding RNAs.
MA619601 - JP 2018138019-A/191527: Polycomb-Associated Non-Coding RNAs.
AK290127 - Homo sapiens cDNA FLJ76349 complete cds, highly similar to Homo sapiens U11/U12 snRNP 35K (U1SNRNPBP), transcript variant 1, mRNA.
BC047678 - Homo sapiens small nuclear ribonucleoprotein 35kDa (U11/U12), mRNA (cDNA clone MGC:51824 IMAGE:5767646), complete cds.
JD440815 - Sequence 421839 from Patent EP1572962.
JD161695 - Sequence 142719 from Patent EP1572962.
U44799 - Human U1-snRNP binding protein homolog mRNA, complete cds.
JD547712 - Sequence 528736 from Patent EP1572962.
LF359685 - JP 2014500723-A/167188: Polycomb-Associated Non-Coding RNAs.
MA595262 - JP 2018138019-A/167188: Polycomb-Associated Non-Coding RNAs.
JD150028 - Sequence 131052 from Patent EP1572962.
BC054034 - Homo sapiens small nuclear ribonucleoprotein 35kDa (U11/U12), mRNA (cDNA clone MGC:64961 IMAGE:3901191), complete cds.
AK097550 - Homo sapiens cDNA FLJ40231 fis, clone TESTI2023025.
CU687353 - Synthetic construct Homo sapiens gateway clone IMAGE:100023155 3' read FLJ39378 mRNA.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000527158.1, NR_104103, uc001ufc.1, uc001ufc.2
UCSC ID: ENST00000527158.2
RefSeq Accession: NR_104103

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.