Human Gene THSD1 (ENST00000258613.5) from GENCODE V44
Description: Homo sapiens thrombospondin type 1 domain containing 1 (THSD1), transcript variant 1, mRNA. (from RefSeq NM_018676) RefSeq Summary (NM_018676): The protein encoded by this gene contains a type 1 thrombospondin domain, which is found in a number of proteins involved in the complement pathway, as well as in extracellular matrix proteins. Alternatively spliced transcript variants encoding different isoforms have been observed for this gene. [provided by RefSeq, Jan 2009]. Gencode Transcript: ENST00000258613.5 Gencode Gene: ENSG00000136114.17 Transcript (Including UTRs) Position: hg38 chr13:52,377,167-52,406,172 Size: 29,006 Total Exon Count: 5 Strand: - Coding Region Position: hg38 chr13:52,377,411-52,402,600 Size: 25,190 Coding Exon Count: 4
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Pfam Domains: PF00090 - Thrombospondin type 1 domain
ModBase Predicted Comparative 3D Structure on Q9NS62
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.