Human Gene FAM177A1 (ENST00000553901.1) from GENCODE V44
  Description: family with sequence similarity 177 member A1 (from HGNC FAM177A1)
Gencode Transcript: ENST00000553901.1
Gencode Gene: ENSG00000151327.14
Transcript (Including UTRs)
   Position: hg38 chr14:35,099,676-35,110,726 Size: 11,051 Total Exon Count: 4 Strand: +


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:35,099,676-35,110,726)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerGencodeHGNCLynxMalacards
myGene2PubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 16.35 RPKM in Testis
Total median expression: 445.51 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK128559 - Homo sapiens cDNA FLJ46718 fis, clone TRACH3018240.
JD242577 - Sequence 223601 from Patent EP1572962.
JD242576 - Sequence 223600 from Patent EP1572962.
JD374853 - Sequence 355877 from Patent EP1572962.
JD291560 - Sequence 272584 from Patent EP1572962.
JD367178 - Sequence 348202 from Patent EP1572962.
JD352919 - Sequence 333943 from Patent EP1572962.
JD364133 - Sequence 345157 from Patent EP1572962.
JD364134 - Sequence 345158 from Patent EP1572962.
JD321769 - Sequence 302793 from Patent EP1572962.
JD285434 - Sequence 266458 from Patent EP1572962.
JD505177 - Sequence 486201 from Patent EP1572962.
JD412258 - Sequence 393282 from Patent EP1572962.
JD077916 - Sequence 58940 from Patent EP1572962.
JD480236 - Sequence 461260 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK128559, uc001wsv.1
UCSC ID: ENST00000553901.1
RefSeq Accession: NR_110415

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.