Human Gene VCPKMT (ENST00000569518.5) from GENCODE V44
  Description: valosin containing protein lysine methyltransferase (from HGNC VCPKMT)
Gencode Transcript: ENST00000569518.5
Gencode Gene: ENSG00000100483.14
Transcript (Including UTRs)
   Position: hg38 chr14:50,108,632-50,116,477 Size: 7,846 Total Exon Count: 5 Strand: -


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:50,108,632-50,116,477)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerGencodeLynxMalacardsPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 12.41 RPKM in Spleen
Total median expression: 306.26 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC027585 - Homo sapiens chromosome 14 open reading frame 138, mRNA (cDNA clone IMAGE:4831331), partial cds.
AK129564 - Homo sapiens cDNA FLJ26053 fis, clone PRS03169.
LP895299 - Sequence 163 from Patent EP3253886.
JD299673 - Sequence 280697 from Patent EP1572962.
AK023982 - Homo sapiens cDNA FLJ13920 fis, clone Y79AA1000420.
BX247997 - human full-length cDNA clone CS0DH005YM12 of T cells (Jurkat cell line) of Homo sapiens (human).
JD207258 - Sequence 188282 from Patent EP1572962.
JD511904 - Sequence 492928 from Patent EP1572962.
JD463716 - Sequence 444740 from Patent EP1572962.
JD206246 - Sequence 187270 from Patent EP1572962.
JD510714 - Sequence 491738 from Patent EP1572962.
LF209550 - JP 2014500723-A/17053: Polycomb-Associated Non-Coding RNAs.
MA445127 - JP 2018138019-A/17053: Polycomb-Associated Non-Coding RNAs.
JD184428 - Sequence 165452 from Patent EP1572962.
JD422768 - Sequence 403792 from Patent EP1572962.
JD358102 - Sequence 339126 from Patent EP1572962.
JD301492 - Sequence 282516 from Patent EP1572962.
BC105118 - Homo sapiens chromosome 14 open reading frame 138, mRNA (cDNA clone MGC:132778 IMAGE:8144121), complete cds.
BC143673 - Homo sapiens chromosome 14 open reading frame 138, mRNA (cDNA clone MGC:177204 IMAGE:9052187), complete cds.
JD053983 - Sequence 35007 from Patent EP1572962.
BC143674 - Homo sapiens chromosome 14 open reading frame 138, mRNA (cDNA clone MGC:177205 IMAGE:9052188), complete cds.
JD554337 - Sequence 535361 from Patent EP1572962.
JD263278 - Sequence 244302 from Patent EP1572962.
JD080626 - Sequence 61650 from Patent EP1572962.
LF329421 - JP 2014500723-A/136924: Polycomb-Associated Non-Coding RNAs.
MA564998 - JP 2018138019-A/136924: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000569518.1, ENST00000569518.2, ENST00000569518.3, ENST00000569518.4, LP895299, uc001wxn.1, uc001wxn.2
UCSC ID: ENST00000569518.5
RefSeq Accession: NR_049739

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.