Human Gene ACOT1 (ENST00000311148.9) from GENCODE V44
  Description: Homo sapiens acyl-CoA thioesterase 1 (ACOT1), mRNA. (from RefSeq NM_001037161)
Gencode Transcript: ENST00000311148.9
Gencode Gene: ENSG00000184227.8
Transcript (Including UTRs)
   Position: hg38 chr14:73,537,143-73,543,796 Size: 6,654 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg38 chr14:73,537,422-73,543,655 Size: 6,234 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:73,537,143-73,543,796)mRNA (may differ from genome)Protein (421 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ACOT1_HUMAN
DESCRIPTION: RecName: Full=Acyl-coenzyme A thioesterase 1; Short=Acyl-CoA thioesterase 1; EC=3.1.2.2; AltName: Full=CTE-I; AltName: Full=CTE-Ib; AltName: Full=Inducible cytosolic acyl-coenzyme A thioester hydrolase; AltName: Full=Long chain acyl-CoA thioester hydrolase; Short=Long chain acyl-CoA hydrolase;
FUNCTION: Acyl-CoA thioesterases are a group of enzymes that catalyze the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Active towards fatty acyl-CoA with chain-lengths of C12-C16 (By similarity).
CATALYTIC ACTIVITY: Palmitoyl-CoA + H(2)O = CoA + palmitate.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=35.8 uM for C10-acyl-CoA; KM=3.6 uM for C12-acyl-CoA; KM=2.8 uM for C14-acyl-CoA; KM=3.6 uM for C16-acyl-CoA; KM=2.4 uM for C18-acyl-CoA; KM=2 uM for C20-acyl-CoA; KM=2.4 uM for C16:1-acyl-CoA; KM=4.1 uM for C18:1-acyl-CoA; KM=2.1 uM for C18:1-trans-acyl-CoA; Vmax=224 nmol/min/mg enzyme toward C10-acyl-CoA; Vmax=700 nmol/min/mg enzyme toward C12-acyl-CoA; Vmax=912 nmol/min/mg enzyme toward C14-acyl-CoA; Vmax=691 nmol/min/mg enzyme toward C16-acyl-CoA; Vmax=597 nmol/min/mg enzyme toward C18-acyl-CoA; Vmax=520 nmol/min/mg enzyme toward C20-acyl-CoA; Vmax=577 nmol/min/mg enzyme toward C16:1-acyl-CoA; Vmax=258 nmol/min/mg enzyme toward C18:1-acyl-CoA; Vmax=309 nmol/min/mg enzyme toward C18:1-trans-acyl-CoA;
SUBUNIT: Monomer (By similarity).
SUBCELLULAR LOCATION: Cytoplasm.
SIMILARITY: Belongs to the C/M/P thioester hydrolase family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ACOT1
Diseases sorted by gene-association score: retinitis pigmentosa 67 (6), spindle cell hemangioma (6), human immunodeficiency virus infectious disease (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.06 RPKM in Liver
Total median expression: 159.70 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -99.90279-0.358 Picture PostScript Text
3' UTR -17.90141-0.127 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016662 - Acyl-CoA_thioEstase_long-chain
IPR014940 - BAAT_C
IPR006862 - Thio_Ohase/aa_AcTrfase

Pfam Domains:
PF08840 - BAAT / Acyl-CoA thioester hydrolase C terminal
PF04775 - Acyl-CoA thioester hydrolase/BAAT N-terminal region

ModBase Predicted Comparative 3D Structure on Q86TX2
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologNo orthologNo ortholog
      
      
  Ensembl   
  Protein Sequence   
  Alignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0016290 palmitoyl-CoA hydrolase activity
GO:0016787 hydrolase activity
GO:0016790 thiolester hydrolase activity
GO:0047617 acyl-CoA hydrolase activity
GO:0052689 carboxylic ester hydrolase activity

Biological Process:
GO:0000038 very long-chain fatty acid metabolic process
GO:0001676 long-chain fatty acid metabolic process
GO:0006637 acyl-CoA metabolic process

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  BX161396 - human full-length cDNA clone CS0DC012YL01 of Neuroblastoma of Homo sapiens (human).
AK300886 - Homo sapiens cDNA FLJ54503 complete cds, highly similar to Acyl-coenzyme A thioesterase 1 (EC 3.1.2.2).
JD380050 - Sequence 361074 from Patent EP1572962.
DQ082754 - Homo sapiens acyl-CoA thioesterase 1 (ACOT1) mRNA, complete cds.
BC127747 - Homo sapiens acyl-CoA thioesterase 1, mRNA (cDNA clone MGC:157858 IMAGE:40127752), complete cds.
BC127748 - Homo sapiens acyl-CoA thioesterase 1, mRNA (cDNA clone MGC:157859 IMAGE:40127753), complete cds.
BC143042 - Homo sapiens acyl-CoA thioesterase 1, mRNA (cDNA clone MGC:165299 IMAGE:40127754), complete cds.
BC144425 - Homo sapiens cDNA clone MGC:177963 IMAGE:9052946, complete cds.
BC132889 - Homo sapiens acyl-CoA thioesterase 1, mRNA (cDNA clone MGC:164520 IMAGE:40146911), complete cds.
BC132891 - Homo sapiens acyl-CoA thioesterase 1, mRNA (cDNA clone MGC:164522 IMAGE:40146913), complete cds.
KJ896315 - Synthetic construct Homo sapiens clone ccsbBroadEn_05709 ACOT1 gene, encodes complete protein.
GU727640 - Homo sapiens epididymis secretory sperm binding protein Li 188n mRNA, complete cds.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa01040 - Biosynthesis of unsaturated fatty acids

Reactome (by CSHL, EBI, and GO)

Protein Q86TX2 (Reactome details) participates in the following event(s):

R-HSA-5690043 Cytosolic ACOTs hydrolyse MCFA-CoA, LCFA-CoA
R-HSA-77289 Mitochondrial Fatty Acid Beta-Oxidation
R-HSA-8978868 Fatty acid metabolism
R-HSA-556833 Metabolism of lipids
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A1L173, ACOT1_HUMAN, CTE1, ENST00000311148.1, ENST00000311148.2, ENST00000311148.3, ENST00000311148.4, ENST00000311148.5, ENST00000311148.6, ENST00000311148.7, ENST00000311148.8, NM_001037161, Q3I5F9, Q86TX2, uc001xol.1, uc001xol.2, uc001xol.3
UCSC ID: ENST00000311148.9
RefSeq Accession: NM_001037161
Protein: Q86TX2 (aka ACOT1_HUMAN)
CCDS: CCDS32117.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.