Human Gene MYEF2 (ENST00000267836.10) from GENCODE V44
  Description: Homo sapiens myelin expression factor 2 (MYEF2), transcript variant 2, mRNA. (from RefSeq NM_001301210)
Gencode Transcript: ENST00000267836.10
Gencode Gene: ENSG00000104177.20
Transcript (Including UTRs)
   Position: hg38 chr15:48,141,797-48,178,353 Size: 36,557 Total Exon Count: 16 Strand: -
Coding Region
   Position: hg38 chr15:48,142,908-48,178,237 Size: 35,330 Coding Exon Count: 16 

Page IndexSequence and LinksPrimersMalaCardsCTDRNA-Seq Expression
Microarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:48,141,797-48,178,353)mRNA (may differ from genome)Protein (576 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCLynxMalacardsMGIPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MYEF2
Diseases sorted by gene-association score: loeys-dietz syndrome (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 13.20 RPKM in Pituitary
Total median expression: 189.14 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -49.10116-0.423 Picture PostScript Text
3' UTR -205.401111-0.185 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  LF205868 - JP 2014500723-A/13371: Polycomb-Associated Non-Coding RNAs.
MA441445 - JP 2018138019-A/13371: Polycomb-Associated Non-Coding RNAs.
LF205869 - JP 2014500723-A/13372: Polycomb-Associated Non-Coding RNAs.
MA441446 - JP 2018138019-A/13372: Polycomb-Associated Non-Coding RNAs.
BX647197 - Homo sapiens mRNA; cDNA DKFZp686I24244 (from clone DKFZp686I24244).
AB037762 - Homo sapiens KIAA1341 mRNA for KIAA1341 protein.
BC152420 - Homo sapiens myelin expression factor 2, mRNA (cDNA clone MGC:176653 IMAGE:8862532), complete cds.
BC152451 - Homo sapiens myelin expression factor 2, mRNA (cDNA clone MGC:176704 IMAGE:8862583), complete cds.
LP895311 - Sequence 175 from Patent EP3253886.
AK002075 - Homo sapiens cDNA FLJ11213 fis, clone PLACE1007969, weakly similar to HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN M.
AF190159 - Homo sapiens MSTP156 (MST156) mRNA, complete cds.
BC014533 - Homo sapiens myelin expression factor 2, mRNA (cDNA clone IMAGE:4133844), complete cds.
AK023133 - Homo sapiens cDNA FLJ13071 fis, clone NT2RP3001792, moderately similar to HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN M.
AF106685 - Homo sapiens myelin gene expression factor 2 mRNA, complete cds.
JD545765 - Sequence 526789 from Patent EP1572962.
LF349124 - JP 2014500723-A/156627: Polycomb-Associated Non-Coding RNAs.
MA584701 - JP 2018138019-A/156627: Polycomb-Associated Non-Coding RNAs.
JD130281 - Sequence 111305 from Patent EP1572962.
CU677037 - Synthetic construct Homo sapiens gateway clone IMAGE:100018587 5' read MYEF2 mRNA.
AB384181 - Synthetic construct DNA, clone: pF1KSDA1341, Homo sapiens MYEF2 gene for myelin expression factor 2, complete cds, without stop codon, in Flexi system.
BC167842 - Synthetic construct Homo sapiens clone IMAGE:100068232, MGC:195849 myelin expression factor 2 (MYEF2) mRNA, encodes complete protein.
LF349125 - JP 2014500723-A/156628: Polycomb-Associated Non-Coding RNAs.
MA584702 - JP 2018138019-A/156628: Polycomb-Associated Non-Coding RNAs.
LF349126 - JP 2014500723-A/156629: Polycomb-Associated Non-Coding RNAs.
MA584703 - JP 2018138019-A/156629: Polycomb-Associated Non-Coding RNAs.
LF349130 - JP 2014500723-A/156633: Polycomb-Associated Non-Coding RNAs.
MA584707 - JP 2018138019-A/156633: Polycomb-Associated Non-Coding RNAs.
LF351161 - JP 2014500723-A/158664: Polycomb-Associated Non-Coding RNAs.
MA586738 - JP 2018138019-A/158664: Polycomb-Associated Non-Coding RNAs.
LF349131 - JP 2014500723-A/156634: Polycomb-Associated Non-Coding RNAs.
MA584708 - JP 2018138019-A/156634: Polycomb-Associated Non-Coding RNAs.
LF351160 - JP 2014500723-A/158663: Polycomb-Associated Non-Coding RNAs.
MA586737 - JP 2018138019-A/158663: Polycomb-Associated Non-Coding RNAs.
LF349132 - JP 2014500723-A/156635: Polycomb-Associated Non-Coding RNAs.
MA584709 - JP 2018138019-A/156635: Polycomb-Associated Non-Coding RNAs.
LF349133 - JP 2014500723-A/156636: Polycomb-Associated Non-Coding RNAs.
MA584710 - JP 2018138019-A/156636: Polycomb-Associated Non-Coding RNAs.
LF349138 - JP 2014500723-A/156641: Polycomb-Associated Non-Coding RNAs.
MA584715 - JP 2018138019-A/156641: Polycomb-Associated Non-Coding RNAs.
LF349140 - JP 2014500723-A/156643: Polycomb-Associated Non-Coding RNAs.
MA584717 - JP 2018138019-A/156643: Polycomb-Associated Non-Coding RNAs.
LF351159 - JP 2014500723-A/158662: Polycomb-Associated Non-Coding RNAs.
MA586736 - JP 2018138019-A/158662: Polycomb-Associated Non-Coding RNAs.
LF351158 - JP 2014500723-A/158661: Polycomb-Associated Non-Coding RNAs.
MA586735 - JP 2018138019-A/158661: Polycomb-Associated Non-Coding RNAs.
BC068523 - Homo sapiens myelin expression factor 2, mRNA (cDNA clone IMAGE:5298408), complete cds.
LF349144 - JP 2014500723-A/156647: Polycomb-Associated Non-Coding RNAs.
MA584721 - JP 2018138019-A/156647: Polycomb-Associated Non-Coding RNAs.
LF349146 - JP 2014500723-A/156649: Polycomb-Associated Non-Coding RNAs.
MA584723 - JP 2018138019-A/156649: Polycomb-Associated Non-Coding RNAs.
LF351157 - JP 2014500723-A/158660: Polycomb-Associated Non-Coding RNAs.
MA586734 - JP 2018138019-A/158660: Polycomb-Associated Non-Coding RNAs.
LF349147 - JP 2014500723-A/156650: Polycomb-Associated Non-Coding RNAs.
MA584724 - JP 2018138019-A/156650: Polycomb-Associated Non-Coding RNAs.
LF349148 - JP 2014500723-A/156651: Polycomb-Associated Non-Coding RNAs.
MA584725 - JP 2018138019-A/156651: Polycomb-Associated Non-Coding RNAs.
LF351156 - JP 2014500723-A/158659: Polycomb-Associated Non-Coding RNAs.
MA586733 - JP 2018138019-A/158659: Polycomb-Associated Non-Coding RNAs.
LF351155 - JP 2014500723-A/158658: Polycomb-Associated Non-Coding RNAs.
MA586732 - JP 2018138019-A/158658: Polycomb-Associated Non-Coding RNAs.
LF349152 - JP 2014500723-A/156655: Polycomb-Associated Non-Coding RNAs.
MA584729 - JP 2018138019-A/156655: Polycomb-Associated Non-Coding RNAs.
LF349157 - JP 2014500723-A/156660: Polycomb-Associated Non-Coding RNAs.
MA584734 - JP 2018138019-A/156660: Polycomb-Associated Non-Coding RNAs.
LF351154 - JP 2014500723-A/158657: Polycomb-Associated Non-Coding RNAs.
MA586731 - JP 2018138019-A/158657: Polycomb-Associated Non-Coding RNAs.
LF351153 - JP 2014500723-A/158656: Polycomb-Associated Non-Coding RNAs.
MA586730 - JP 2018138019-A/158656: Polycomb-Associated Non-Coding RNAs.
LF349160 - JP 2014500723-A/156663: Polycomb-Associated Non-Coding RNAs.
MA584737 - JP 2018138019-A/156663: Polycomb-Associated Non-Coding RNAs.
LF349161 - JP 2014500723-A/156664: Polycomb-Associated Non-Coding RNAs.
MA584738 - JP 2018138019-A/156664: Polycomb-Associated Non-Coding RNAs.
LF349162 - JP 2014500723-A/156665: Polycomb-Associated Non-Coding RNAs.
MA584739 - JP 2018138019-A/156665: Polycomb-Associated Non-Coding RNAs.
LF351152 - JP 2014500723-A/158655: Polycomb-Associated Non-Coding RNAs.
MA586729 - JP 2018138019-A/158655: Polycomb-Associated Non-Coding RNAs.
LF349172 - JP 2014500723-A/156675: Polycomb-Associated Non-Coding RNAs.
MA584749 - JP 2018138019-A/156675: Polycomb-Associated Non-Coding RNAs.
JD138905 - Sequence 119929 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0A0MQW0, ENST00000267836.1, ENST00000267836.2, ENST00000267836.3, ENST00000267836.4, ENST00000267836.5, ENST00000267836.6, ENST00000267836.7, ENST00000267836.8, ENST00000267836.9, NM_001301210, uc001zwj.1, uc001zwj.2, uc001zwj.3, uc001zwj.4, uc001zwj.5
UCSC ID: ENST00000267836.10
RefSeq Accession: NM_001301210
CCDS: CCDS32230.1, CCDS73722.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.