Human Gene CCDC78 (ENST00000482878.5) from GENCODE V44
  Description: coiled-coil domain containing 78 (from HGNC CCDC78)
RefSeq Summary (NR_165382): The product of this gene contains two coiled-coil domains. The function of this gene is currently unknown. [provided by RefSeq, Sep 2012].
Gencode Transcript: ENST00000482878.5
Gencode Gene: ENSG00000162004.19
Transcript (Including UTRs)
   Position: hg38 chr16:722,582-726,456 Size: 3,875 Total Exon Count: 4 Strand: -


Page IndexSequence and LinksPrimersMalaCardsRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:722,582-726,456)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblExonPrimerGencodeHGNCLynxMalacards
PubMedWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CCDC78
Diseases sorted by gene-association score: myopathy, centronuclear, 4* (1419)
* = Manually curated disease association

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 14.64 RPKM in Brain - Caudate (basal ganglia)
Total median expression: 136.78 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC027941 - Homo sapiens coiled-coil domain containing 78, mRNA (cDNA clone IMAGE:5204310), with apparent retained intron.
BC031561 - Homo sapiens coiled-coil domain containing 78, mRNA (cDNA clone IMAGE:5181942).
BC042110 - Homo sapiens coiled-coil domain containing 78, mRNA (cDNA clone MGC:50726 IMAGE:5177109), complete cds.
AK127495 - Homo sapiens cDNA FLJ45588 fis, clone BRTHA3014507.
AK128575 - Homo sapiens cDNA FLJ46734 fis, clone TRACH3020563.
AK091831 - Homo sapiens cDNA FLJ34512 fis, clone HLUNG2006570.
AK128538 - Homo sapiens cDNA FLJ46696 fis, clone TRACH3013072.
AX747208 - Sequence 733 from Patent EP1308459.
AK057178 - Homo sapiens cDNA FLJ32616 fis, clone STOMA2000188.
JD228398 - Sequence 209422 from Patent EP1572962.
JD075946 - Sequence 56970 from Patent EP1572962.
JD517062 - Sequence 498086 from Patent EP1572962.
JD483823 - Sequence 464847 from Patent EP1572962.
JD374166 - Sequence 355190 from Patent EP1572962.
JD382987 - Sequence 364011 from Patent EP1572962.
JD148433 - Sequence 129457 from Patent EP1572962.
JD067683 - Sequence 48707 from Patent EP1572962.
JD115515 - Sequence 96539 from Patent EP1572962.
JD194125 - Sequence 175149 from Patent EP1572962.
JD203250 - Sequence 184274 from Patent EP1572962.
JD326407 - Sequence 307431 from Patent EP1572962.
JD461382 - Sequence 442406 from Patent EP1572962.
JD188790 - Sequence 169814 from Patent EP1572962.
JD129032 - Sequence 110056 from Patent EP1572962.
JD354460 - Sequence 335484 from Patent EP1572962.
AK298111 - Homo sapiens cDNA FLJ60745 complete cds.
AK303991 - Homo sapiens cDNA FLJ57861 complete cds.
JD392534 - Sequence 373558 from Patent EP1572962.
JD495925 - Sequence 476949 from Patent EP1572962.
JD461713 - Sequence 442737 from Patent EP1572962.
JD535604 - Sequence 516628 from Patent EP1572962.
JD199994 - Sequence 181018 from Patent EP1572962.
JD492655 - Sequence 473679 from Patent EP1572962.
KJ903707 - Synthetic construct Homo sapiens clone ccsbBroadEn_13101 CCDC78 gene, encodes complete protein.
JD229581 - Sequence 210605 from Patent EP1572962.
JD318581 - Sequence 299605 from Patent EP1572962.
JD098674 - Sequence 79698 from Patent EP1572962.
JD104916 - Sequence 85940 from Patent EP1572962.
JD513843 - Sequence 494867 from Patent EP1572962.
JD050571 - Sequence 31595 from Patent EP1572962.
AY439221 - Homo sapiens hypothetical protein FLJ34512 mRNA, complete cds, alternatively spliced.
JD519265 - Sequence 500289 from Patent EP1572962.
JD275986 - Sequence 257010 from Patent EP1572962.
JD370028 - Sequence 351052 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK128538, ENST00000482878.1, ENST00000482878.2, ENST00000482878.3, ENST00000482878.4, uc002cji.1, uc002cji.2, uc002cji.3, uc002cji.4
UCSC ID: ENST00000482878.5
RefSeq Accession: NR_165382

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.