Human Gene NPIPA1 (ENST00000328085.10) from GENCODE V44
Description: Homo sapiens nuclear pore complex interacting protein family member A1 (NPIPA1), mRNA. (from RefSeq NM_006985)
Gencode Transcript: ENST00000328085.10
Gencode Gene: ENSG00000183426.17
Transcript (Including UTRs)
Position: hg38 chr16:14,937,443-14,952,056 Size: 14,614 Total Exon Count: 8 Strand: +
Coding Region
Position: hg38 chr16:14,937,443-14,952,025 Size: 14,583 Coding Exon Count: 8
Data last updated at UCSC: 2023-08-18 00:09:47
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
ID: NPIP_HUMAN
DESCRIPTION: RecName: Full=Nuclear pore complex-interacting protein; Short=NPIP;
SUBUNIT: May associate with the nuclear pore complex.SUBCELLULAR LOCATION: Nucleus, nuclear pore complex. Nucleus membrane. Note=Colocalizes with nuclear pore complex protein NUP62.TISSUE SPECIFICITY: Widely expressed.SIMILARITY: Belongs to the NPIP family.
Primer design for this transcript
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR009443 - NPIP
Pfam Domains: PF06409 - Nuclear pore complex interacting protein (NPIP)
ModBase Predicted Comparative 3D Structure on Q9UND3
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Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse Rat Zebrafish D. melanogaster C. elegans S. cerevisiae
No ortholog No ortholog No ortholog No ortholog No ortholog No ortholog
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
KJ906490 - Synthetic construct Homo sapiens clone ccsbBroadEn_16160 PKD1P1 gene, encodes complete protein.AB209632 - Homo sapiens mRNA for PI-3-kinase-related kinase SMG-1 isoform 1homolog protein.AK316459 - Homo sapiens cDNA, FLJ79358 complete cds.AK303607 - Homo sapiens cDNA FLJ61625 complete cds.AK293635 - Homo sapiens cDNA FLJ59829 complete cds.AK296301 - Homo sapiens cDNA FLJ56878 complete cds.AK310414 - Homo sapiens cDNA, FLJ17456.AK160377 - Homo sapiens mRNA for FLJ00322 protein.BC023572 - Homo sapiens mRNA similar to polycystic kidney disease 1 (autosomal dominant) (cDNA clone IMAGE:4559025).BC063821 - Homo sapiens cDNA clone IMAGE:6192147, **** WARNING: chimeric clone ****.KF175209 - Homo sapiens clone p_2 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence.KF175211 - Homo sapiens clone p_4 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence.KF175212 - Homo sapiens clone p_5 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence.KF175214 - Homo sapiens clone p_7 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence.KF175219 - Homo sapiens clone p_12 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence.KF175165 - Homo sapiens clone 1 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175166 - Homo sapiens clone 2 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175167 - Homo sapiens clone 3 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175174 - Homo sapiens clone 10 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175213 - Homo sapiens clone p_6 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence.CU692310 - Synthetic construct Homo sapiens gateway clone IMAGE:100021387 5' read LOC339047 mRNA.AB528194 - Synthetic construct DNA, clone: pF1KB7383, Homo sapiens NPIP gene for nuclear pore complex interacting protein, without stop codon, in Flexi system.KF175225 - Homo sapiens clone K2.5 nuclear pore complex-interacting protein A type (NPIPA) mRNA, complete cds.BC146422 - Synthetic construct Homo sapiens clone IMAGE:100015091, MGC:180199 nuclear pore complex interacting protein (NPIP) mRNA, encodes complete protein.AF132984 - Homo sapiens nuclear pore complex interacting protein NPIP (NPIP) mRNA, complete cds.KF175169 - Homo sapiens clone 5 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175172 - Homo sapiens clone 8 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175170 - Homo sapiens clone 6 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175208 - Homo sapiens clone p_1 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence.KF175210 - Homo sapiens clone p_3 nuclear pore complex-interacting protein (NPIP) pseudogene mRNA, partial sequence.KF175168 - Homo sapiens clone 4 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.KF175171 - Homo sapiens clone 7 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.AB075516 - Homo sapiens neuroblastoma cDNA, clone:Nbla00537, full insert sequence.JD462309 - Sequence 443333 from Patent EP1572962.JD510674 - Sequence 491698 from Patent EP1572962.KF175173 - Homo sapiens clone 9 nuclear pore complex-interacting protein (NPIP) mRNA, partial cds.DQ586845 - Homo sapiens piRNA piR-53957, complete sequence.JD047111 - Sequence 28135 from Patent EP1572962.AK294177 - Homo sapiens cDNA FLJ56769 complete cds, weakly similar to Nuclear pore complex-interacting protein.JD318007 - Sequence 299031 from Patent EP1572962.JD148746 - Sequence 129770 from Patent EP1572962.JD347493 - Sequence 328517 from Patent EP1572962.JD391234 - Sequence 372258 from Patent EP1572962.JD082959 - Sequence 63983 from Patent EP1572962.JD347493 - Sequence 328517 from Patent EP1572962.JD143063 - Sequence 124087 from Patent EP1572962.JD416161 - Sequence 397185 from Patent EP1572962.JD082959 - Sequence 63983 from Patent EP1572962.JD347493 - Sequence 328517 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: ENST00000328085.1, ENST00000328085.2, ENST00000328085.3, ENST00000328085.4, ENST00000328085.5, ENST00000328085.6, ENST00000328085.7, ENST00000328085.8, ENST00000328085.9, NM_006985, NPIP, NPIP_HUMAN, O15102, Q9UND3, uc002dcy.1, uc002dcy.2, uc002dcy.3, uc002dcy.4, uc002dcy.5UCSC ID: ENST00000328085.10RefSeq Accession: NM_006985
Protein: Q9UND3
(aka NPIP_HUMAN)
CCDS: CCDS10557.1
Methods, Credits, and Use Restrictions
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