Human Gene INCA1 (ENST00000575780.5) from GENCODE V44
  Description: Interacts with CCNA1. Identified in a complex with CCNA1 and CDK2. (from UniProt Q0VD86)
Gencode Transcript: ENST00000575780.5
Gencode Gene: ENSG00000196388.9
Transcript (Including UTRs)
   Position: hg38 chr17:4,988,130-4,997,610 Size: 9,481 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg38 chr17:4,988,405-4,994,437 Size: 6,033 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:4,988,130-4,997,610)mRNA (may differ from genome)Protein (221 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGencodeGeneCardsHGNC
HPRDLynxMGIneXtProtPubMedUniProtKB
Wikipedia

-  Comments and Description Text from UniProtKB
  ID: INCA1_HUMAN
DESCRIPTION: RecName: Full=Protein INCA1; AltName: Full=Inhibitor of CDK interacting with cyclin A1;
SUBUNIT: Interacts with CCNA1. Identified in a complex with CCNA1 and CDK2.
SUBCELLULAR LOCATION: Nucleus.
TISSUE SPECIFICITY: Detected in testis, and at lower levels in ovary. Detected at very low levels in testis tumors.
PTM: Phosphorylated when part of a complex with CCNA1 and CDK2. Strongly phosphorylated by CDK2 on its C-terminal region spanning amino acid 149-221. Less intensively phosphorylated by CDK2 on its first 75 amino acid residues.
SIMILARITY: Belongs to the INCA family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 42.66 RPKM in Testis
Total median expression: 148.18 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -79.00280-0.282 Picture PostScript Text
3' UTR -70.30275-0.256 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026238 - INCA1

ModBase Predicted Comparative 3D Structure on Q0VD86
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity
GO:0005515 protein binding
GO:0030332 cyclin binding
GO:0044877 macromolecular complex binding

Biological Process:
GO:0008285 negative regulation of cell proliferation
GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:2001235 positive regulation of apoptotic signaling pathway

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0016604 nuclear body


-  Descriptions from all associated GenBank mRNAs
  AY604176 - Homo sapiens HSD45 mRNA, complete cds.
AY601906 - Homo sapiens clone INCA1_01 inhibitor of CDK interacting with cyclin A1 (INCA1) mRNA, complete cds.
AY601907 - Homo sapiens clone INCA1_02 inhibitor of CDK interacting with cyclin A1 (INCA1) mRNA, complete cds.
BC119781 - Homo sapiens inhibitor of CDK interacting with cyclin A1, mRNA (cDNA clone MGC:148150 IMAGE:40109268), complete cds.
BC122873 - Homo sapiens inhibitor of CDK interacting with cyclin A1, mRNA (cDNA clone MGC:148151 IMAGE:40109270), complete cds.
KJ896181 - Synthetic construct Homo sapiens clone ccsbBroadEn_05575 INCA1 gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000575780.1, ENST00000575780.2, ENST00000575780.3, ENST00000575780.4, HSD45, INCA1_HUMAN, NM_001394791, Q0VD86, Q6J273, Q6PKN9, uc002gam.1, uc002gam.2, uc002gam.3
UCSC ID: ENST00000575780.5
RefSeq Accession: NM_001167985
Protein: Q0VD86 (aka INCA1_HUMAN)
CCDS: CCDS11064.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.