Human Gene ASB16-AS1 (ENST00000585457.6) from GENCODE V44
  Description: Homo sapiens ASB16 antisense RNA 1 (ASB16-AS1), transcript variant 1, long non-coding RNA. (from RefSeq NR_049729)
Gencode Transcript: ENST00000585457.6
Gencode Gene: ENSG00000267080.8
Transcript (Including UTRs)
   Position: hg38 chr17:44,175,973-44,186,707 Size: 10,735 Total Exon Count: 4 Strand: -


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:44,175,973-44,186,707)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
EnsemblEntrez GeneExonPrimerGencodeHGNCLynx
PubMedBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.28 RPKM in Pituitary
Total median expression: 231.96 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC009448 - Homo sapiens chromosome 17 open reading frame 65, mRNA (cDNA clone MGC:15891 IMAGE:3530891), complete cds.
AK055685 - Homo sapiens cDNA FLJ31123 fis, clone IMR322000791, weakly similar to SYNAPSINS IA AND IB.
JD195266 - Sequence 176290 from Patent EP1572962.
JD223647 - Sequence 204671 from Patent EP1572962.
JD393370 - Sequence 374394 from Patent EP1572962.
JD217926 - Sequence 198950 from Patent EP1572962.
JD072529 - Sequence 53553 from Patent EP1572962.
JD117800 - Sequence 98824 from Patent EP1572962.
JD466738 - Sequence 447762 from Patent EP1572962.
JD293582 - Sequence 274606 from Patent EP1572962.
JD488449 - Sequence 469473 from Patent EP1572962.
JD120271 - Sequence 101295 from Patent EP1572962.
JD170965 - Sequence 151989 from Patent EP1572962.
JD530622 - Sequence 511646 from Patent EP1572962.
JD418829 - Sequence 399853 from Patent EP1572962.
JD064079 - Sequence 45103 from Patent EP1572962.
JD300856 - Sequence 281880 from Patent EP1572962.
JD566953 - Sequence 547977 from Patent EP1572962.
JD051598 - Sequence 32622 from Patent EP1572962.
BC100964 - Homo sapiens chromosome 17 open reading frame 65, mRNA (cDNA clone MGC:119234 IMAGE:40004836), complete cds.
BC100965 - Homo sapiens chromosome 17 open reading frame 65, mRNA (cDNA clone MGC:119235 IMAGE:40004837), complete cds.
BC100967 - Homo sapiens chromosome 17 open reading frame 65, mRNA (cDNA clone MGC:119237 IMAGE:40004839), complete cds.
BC100966 - Homo sapiens chromosome 17 open reading frame 65, mRNA (cDNA clone MGC:119236 IMAGE:40004838), complete cds.
JD338966 - Sequence 319990 from Patent EP1572962.
JD338965 - Sequence 319989 from Patent EP1572962.
JD361715 - Sequence 342739 from Patent EP1572962.
JD281825 - Sequence 262849 from Patent EP1572962.
JD061450 - Sequence 42474 from Patent EP1572962.
JD457194 - Sequence 438218 from Patent EP1572962.
JD110131 - Sequence 91155 from Patent EP1572962.
JD265790 - Sequence 246814 from Patent EP1572962.
JD226950 - Sequence 207974 from Patent EP1572962.
JD297397 - Sequence 278421 from Patent EP1572962.
KJ896055 - Synthetic construct Homo sapiens clone ccsbBroadEn_05449 C17orf65 gene, encodes complete protein.
JD102905 - Sequence 83929 from Patent EP1572962.
JD478056 - Sequence 459080 from Patent EP1572962.
JD541906 - Sequence 522930 from Patent EP1572962.
JD391711 - Sequence 372735 from Patent EP1572962.
JD205434 - Sequence 186458 from Patent EP1572962.
JD479086 - Sequence 460110 from Patent EP1572962.
JD282860 - Sequence 263884 from Patent EP1572962.
JD142325 - Sequence 123349 from Patent EP1572962.
JD163868 - Sequence 144892 from Patent EP1572962.
JD432923 - Sequence 413947 from Patent EP1572962.
JD474344 - Sequence 455368 from Patent EP1572962.
JD234268 - Sequence 215292 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000585457.1, ENST00000585457.2, ENST00000585457.3, ENST00000585457.4, ENST00000585457.5, NR_049729, uc002ifn.1, uc002ifn.2, uc002ifn.3, uc002ifn.4, uc002ifn.5, uc002ifn.6
UCSC ID: ENST00000585457.6
RefSeq Accession: NR_049729

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.