Human Gene ARHGAP28 (ENST00000419673.6) from GENCODE V44
  Description: Homo sapiens Rho GTPase activating protein 28 (ARHGAP28), transcript variant 1, mRNA. (from RefSeq NM_001010000)
Gencode Transcript: ENST00000419673.6
Gencode Gene: ENSG00000088756.13
Transcript (Including UTRs)
   Position: hg38 chr18:6,834,475-6,915,716 Size: 81,242 Total Exon Count: 17 Strand: +
Coding Region
   Position: hg38 chr18:6,837,349-6,912,154 Size: 74,806 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr18:6,834,475-6,915,716)mRNA (may differ from genome)Protein (570 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RHG28_HUMAN
DESCRIPTION: RecName: Full=Rho GTPase-activating protein 28; AltName: Full=Rho-type GTPase-activating protein 28;
FUNCTION: GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state (By similarity).
TISSUE SPECIFICITY: Expressed in testis. Expressed at moderate level in kidney and ovary, and weakly expressed in spleen and skeletal muscle.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR (By similarity).
SIMILARITY: Contains 1 Rho-GAP domain.
SEQUENCE CAUTION: Sequence=BAA91533.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAA92552.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ARHGAP28
Diseases sorted by gene-association score: central nervous system organ benign neoplasm (5), substance dependence (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 13.61 RPKM in Testis
Total median expression: 40.62 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -50.80217-0.234 Picture PostScript Text
3' UTR -804.303562-0.226 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008936 - Rho_GTPase_activation_prot
IPR000198 - RhoGAP_dom

Pfam Domains:
PF00620 - RhoGAP domain

ModBase Predicted Comparative 3D Structure on Q9P2N2
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005096 GTPase activator activity

Biological Process:
GO:0007165 signal transduction
GO:0043547 positive regulation of GTPase activity
GO:0051056 regulation of small GTPase mediated signal transduction
GO:0051497 negative regulation of stress fiber assembly
GO:1904425 negative regulation of GTP binding

Cellular Component:
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AB037735 - Homo sapiens mRNA for KIAA1314 protein, partial cds.
BX648684 - Homo sapiens mRNA; cDNA DKFZp686A2038 (from clone DKFZp686A2038).
AK308259 - Homo sapiens cDNA, FLJ98207.
AK302026 - Homo sapiens cDNA FLJ58638 complete cds, highly similar to Homo sapiens Rho GTPase activating protein 28 (ARHGAP28), transcript variant 1, mRNA.
BC065274 - Homo sapiens Rho GTPase activating protein 28, mRNA (cDNA clone MGC:74885 IMAGE:6164396), complete cds.
AK001174 - Homo sapiens cDNA FLJ10312 fis, clone NT2RM2000363, weakly similar to BREAKPOINT CLUSTER REGION PROTEIN.
AK289791 - Homo sapiens cDNA FLJ75972 complete cds, highly similar to Homo sapiens Rho GTPase activating protein 28, mRNA.
BC033668 - Homo sapiens Rho GTPase activating protein 28, mRNA (cDNA clone IMAGE:5167033), partial cds.
KJ903230 - Synthetic construct Homo sapiens clone ccsbBroadEn_12624 ARHGAP28 gene, encodes complete protein.
CU689688 - Synthetic construct Homo sapiens gateway clone IMAGE:100018197 5' read ARHGAP28 mRNA.
AK024298 - Homo sapiens cDNA FLJ14236 fis, clone NT2RP4000515.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9P2N2 (Reactome details) participates in the following event(s):

R-HSA-194922 GAPs inactivate Rho GTPase:GTP by hydrolysis
R-HSA-194840 Rho GTPase cycle
R-HSA-194315 Signaling by Rho GTPases
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A8MQB7, A8MU88, ENST00000419673.1, ENST00000419673.2, ENST00000419673.3, ENST00000419673.4, ENST00000419673.5, KIAA1314, NM_001010000, Q6P160, Q8N4T3, Q9NW53, Q9P2N2, RHG28_HUMAN, uc002kne.1, uc002kne.2, uc002kne.3, uc002kne.4
UCSC ID: ENST00000419673.6
RefSeq Accession: NM_001010000
Protein: Q9P2N2 (aka RHG28_HUMAN)
CCDS: CCDS32785.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.