Human Gene FZR1 (ENST00000313639.8) from GENCODE V44
  Description: Homo sapiens fizzy and cell division cycle 20 related 1 (FZR1), transcript variant 3, mRNA. (from RefSeq NM_001136197)
Gencode Transcript: ENST00000313639.8
Gencode Gene: ENSG00000105325.15
Transcript (Including UTRs)
   Position: hg38 chr19:3,522,990-3,534,836 Size: 11,847 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg38 chr19:3,522,990-3,534,836 Size: 11,847 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA-Seq Expression
Microarray ExpressionProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathways
Other NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:3,522,990-3,534,836)mRNA (may differ from genome)Protein (404 aa)
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OMIMPubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FZR_HUMAN
DESCRIPTION: RecName: Full=Fizzy-related protein homolog; Short=Fzr; AltName: Full=CDC20-like protein 1; AltName: Full=Cdh1/Hct1 homolog; Short=hCDH1;
FUNCTION: Key regulator of ligase activity of the anaphase promoting complex/cyclosome (APC/C), which confers substrate specificity upon the complex. Associates with the APC/C in late mitosis, in replacement of CDC20, and activates the APC/C during anaphase and telophase. The APC/C remains active in degrading substrates to ensure that positive regulators of the cell cycle do not accumulate prematurely. At the G1/S transition FZR1 is phosphorylated, leading to its dissociation from the APC/C. Following DNA damage, it is required for the G2 DNA damage checkpoint: its dephosphorylation and reassociation with the APC/C leads to the ubiquitination of PLK1, preventing entry into mitosis.
PATHWAY: Protein modification; protein ubiquitination.
SUBUNIT: The unphosphorylated form interacts with APC/C during mitosis. Interacts with NINL. Interacts (in complex with the anaphase promoting complex APC) with MAD2L2; inhibits FZR1- mediated APC/C activation. Interacts with USP37. Interacts (via WD repeats) with MAK.
INTERACTION: P30260:CDC27; NbExp=8; IntAct=EBI-724997, EBI-994813; Q9HAW4:CLSPN; NbExp=4; IntAct=EBI-724997, EBI-1369377; Q9UI95:MAD2L2; NbExp=2; IntAct=EBI-724997, EBI-77889; P20794:MAK; NbExp=7; IntAct=EBI-724997, EBI-3911321; P31350:RRM2; NbExp=2; IntAct=EBI-724997, EBI-2339245; Q8IXJ6-2:SIRT2; NbExp=2; IntAct=EBI-724997, EBI-5240785; Q13309:SKP2; NbExp=2; IntAct=EBI-724997, EBI-456291; P40337:VHL; NbExp=2; IntAct=EBI-724997, EBI-301246; P40337-1:VHL; NbExp=2; IntAct=EBI-724997, EBI-3504450; P40337-3:VHL; NbExp=2; IntAct=EBI-724997, EBI-301270;
SUBCELLULAR LOCATION: Isoform 2: Nucleus.
SUBCELLULAR LOCATION: Isoform 3: Cytoplasm.
TISSUE SPECIFICITY: Isoform 2 is expressed at high levels in heart, liver, spleen and some cancer cell lines whereas isoform 3 is expressed only at low levels in these tissues.
PTM: Phosphorylated during mitosis, probably by maturation promoting factor (MPF), leading to its dissociation of the APC/C. Following DNA damage, it is dephosphorylated by CDC14B in G2 phase, leading to its reassociation with the APC/C, and allowing an efficient G2 DNA damage checkpoint. Phosphorylated by MAK.
SIMILARITY: Belongs to the WD repeat CDC20/Fizzy family.
SIMILARITY: Contains 7 WD repeats.
SEQUENCE CAUTION: Sequence=AAD26623.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Sequence of unknown origin in the C-terminal part; Sequence=AAD26624.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Sequence of unknown origin in the N-terminal part; Sequence=BAA86556.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

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-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 57.31 RPKM in Testis
Total median expression: 727.88 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015943 - WD40/YVTN_repeat-like_dom
IPR001680 - WD40_repeat
IPR019775 - WD40_repeat_CS
IPR017986 - WD40_repeat_dom

Pfam Domains:
PF00400 - WD domain, G-beta repeat

ModBase Predicted Comparative 3D Structure on Q9UM11
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0010997 anaphase-promoting complex binding
GO:0097027 ubiquitin-protein transferase activator activity

Biological Process:
GO:0006281 DNA repair
GO:0006974 cellular response to DNA damage stimulus
GO:0007049 cell cycle
GO:0008284 positive regulation of cell proliferation
GO:0016567 protein ubiquitination
GO:0031145 anaphase-promoting complex-dependent catabolic process
GO:0040020 regulation of meiotic nuclear division
GO:0045732 positive regulation of protein catabolic process
GO:0051301 cell division
GO:0070306 lens fiber cell differentiation
GO:0070979 protein K11-linked ubiquitination
GO:0072425 signal transduction involved in G2 DNA damage checkpoint
GO:0090344 negative regulation of cell aging
GO:1904668 positive regulation of ubiquitin protein ligase activity

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0031965 nuclear membrane
GO:0005680 anaphase-promoting complex


-  Descriptions from all associated GenBank mRNAs
  BC013413 - Homo sapiens fizzy/cell division cycle 20 related 1 (Drosophila), mRNA (cDNA clone MGC:4589 IMAGE:3160334), complete cds.
AF102507 - Homo sapiens fizzy-related protein mRNA, partial cds.
AF083810 - Homo sapiens fizzy-related protein (FYR) mRNA, complete cds.
AB033068 - Homo sapiens KIAA1242 mRNA for KIAA1242 protein.
AB384150 - Synthetic construct DNA, clone: pF1KSDA1242, Homo sapiens FZR1 gene for fizzy-related protein homolog, complete cds, without stop codon, in Flexi system.
DQ890739 - Synthetic construct clone IMAGE:100003369; FLH165584.01X; RZPDo839E03160D fizzy/cell division cycle 20 related 1 (Drosophila) (FZR1) gene, encodes complete protein.
CU680596 - Synthetic construct Homo sapiens gateway clone IMAGE:100019657 5' read FZR1 mRNA.
HQ448330 - Synthetic construct Homo sapiens clone IMAGE:100071748; CCSB006019_01 fizzy/cell division cycle 20 related 1 (Drosophila) (FZR1) gene, encodes complete protein.
KJ893893 - Synthetic construct Homo sapiens clone ccsbBroadEn_03287 FZR1 gene, encodes complete protein.
AF080397 - Homo sapiens fizzy-related protein homolog (FZR) mRNA, complete cds.
BT007115 - Homo sapiens Fzr1 protein mRNA, complete cds.
AB013462 - Homo sapiens mRNA for Fzr1, complete cds.
AB013463 - Homo sapiens mRNA for Fzr2, complete cds.
AF433157 - Homo sapiens CDC20-like 1b mRNA, complete cds.
AF102508 - Homo sapiens fizzy-related protein mRNA, partial cds.
DQ591748 - Homo sapiens piRNA piR-58860, complete sequence.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04110 - Cell cycle
hsa04120 - Ubiquitin mediated proteolysis
hsa04914 - Progesterone-mediated oocyte maturation

Reactome (by CSHL, EBI, and GO)

Protein Q9UM11 (Reactome details) participates in the following event(s):

R-HSA-174251 Phosphorylation of Cdh1 by Cyclin B1:Cdc2
R-HSA-174124 Dephosphorylation of phospho-Cdh1
R-HSA-174070 Association of Cdh1 with the APC/C
R-HSA-174139 Dissociation of phospho-Cdh1 from the APC/C complex
R-HSA-188371 Association of Cyclin A:Cdk2 with Cdh1
R-HSA-3788708 CDKN1A (p21) prevents association of Cyclin A:Cdk2 with Cdh1
R-HSA-3788725 Cdh1:APC/C complex binds EHMT1:EHMT2
R-HSA-174097 Association of Emi1 with Cdh1
R-HSA-187948 Phosphorylation of proteins involved in the G1/S transition by Cyclin A:Cdk2
R-HSA-174088 Association of cell cycle proteins with the APC/C:Cdh1 complex
R-HSA-174057 Multiubiquitination of APC/C-associated Cdh1
R-HSA-174079 Phosphorylation of Cdh1 by Cyclin A:Cdk2
R-HSA-3788705 CDKN1A (p21) prevents phosphorylation of Cdh1 by Cyclin A:Cdk2
R-HSA-3788724 Cdh1:APC/C ubiquitinates EHMT1 and EHMT2
R-HSA-174174 Phosphorylation of the Emi1 DSGxxS degron by Plk1
R-HSA-174122 Phosphorylation of the Emi1 DSGxxS degron by Cyclin B:Cdc2
R-HSA-174195 Ubiquitination of cell cycle proteins targeted by the APC/C:Cdh1complex
R-HSA-69015 Cytoplasmic phosphorylated Cdc6 is ubiquitinated by the anaphase-promoting complex
R-HSA-174209 Phosphorylated Emi1 binds the beta-TrCP in the SCF complex
R-HSA-983157 Interaction of E3 with substrate and E2-Ub complex
R-HSA-983147 Release of E3 from polyubiquitinated substrate
R-HSA-174159 Ubiquitination of Emi1 by SCF-beta-TrCP
R-HSA-983140 Transfer of Ub from E2 to substrate and release of E2
R-HSA-176408 Regulation of APC/C activators between G1/S and early anaphase
R-HSA-176407 Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase
R-HSA-2559582 Senescence-Associated Secretory Phenotype (SASP)
R-HSA-69656 Cyclin A:Cdk2-associated events at S phase entry
R-HSA-174143 APC/C-mediated degradation of cell cycle proteins
R-HSA-174178 APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1
R-HSA-174113 SCF-beta-TrCP mediated degradation of Emi1
R-HSA-174084 Autodegradation of Cdh1 by Cdh1:APC/C
R-HSA-2559583 Cellular Senescence
R-HSA-176417 Phosphorylation of Emi1
R-HSA-69242 S Phase
R-HSA-453276 Regulation of mitotic cell cycle
R-HSA-69017 CDK-mediated phosphorylation and removal of Cdc6
R-HSA-2262752 Cellular responses to stress
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-69052 Switching of origins to a post-replicative state
R-HSA-983168 Antigen processing: Ubiquitination & Proteasome degradation
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-1640170 Cell Cycle
R-HSA-69239 Synthesis of DNA
R-HSA-983169 Class I MHC mediated antigen processing & presentation
R-HSA-69306 DNA Replication
R-HSA-1280218 Adaptive Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: CDH1, ENST00000313639.1, ENST00000313639.2, ENST00000313639.3, ENST00000313639.4, ENST00000313639.5, ENST00000313639.6, ENST00000313639.7, FYR, FZR, FZR_HUMAN, KIAA1242, NM_001136197, O75869, Q86U66, Q96NW8, Q9UI96, Q9ULH8, Q9UM10, Q9UM11, Q9UNQ1, Q9Y2T8, uc002lxv.1, uc002lxv.2, uc002lxv.3
UCSC ID: ENST00000313639.8
RefSeq Accession: NM_001136197
Protein: Q9UM11 (aka FZR_HUMAN)
CCDS: CCDS45917.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.