Human Gene SLC25A23 (ENST00000595810.5) from GENCODE V44
  Description: solute carrier family 25 member 23 (from HGNC SLC25A23)
Gencode Transcript: ENST00000595810.5
Gencode Gene: ENSG00000125648.15
Transcript (Including UTRs)
   Position: hg38 chr19:6,436,079-6,454,009 Size: 17,931 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg38 chr19:6,436,418-6,454,009 Size: 17,592 Coding Exon Count: 4 

Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:6,436,079-6,454,009)mRNA (may differ from genome)Protein (130 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGencodeGeneCardsHGNC
LynxMalacardsMGIPubMedUniProtKB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 173.71 RPKM in Brain - Caudate (basal ganglia)
Total median expression: 1928.80 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -94.00339-0.277 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  BC001656 - Homo sapiens solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23, mRNA (cDNA clone MGC:2615 IMAGE:3356718), complete cds.
JD213492 - Sequence 194516 from Patent EP1572962.
JD326327 - Sequence 307351 from Patent EP1572962.
JD557827 - Sequence 538851 from Patent EP1572962.
JD059366 - Sequence 40390 from Patent EP1572962.
JD371015 - Sequence 352039 from Patent EP1572962.
AJ879080 - Homo sapiens mRNA for mitochondrial ATP-Mg/Pi carrier protein (SLC25A23 gene), variant SCaMC-3b.
AJ879081 - Homo sapiens mRNA for mitochondrial ATP-Mg/Pi carrier protein (SLC25A23 gene), variant SCaMC-3b'.
AJ879082 - Homo sapiens mRNA for mitochondrial ATP-Mg/Pi carrier protein (SLC25A23 gene), variant SCaMC-3c.
AJ879083 - Homo sapiens mRNA for mitochondrial ATP-Mg/Pi carrier protein (SLC25A23 gene), variant SCaMC-3d.
JD223338 - Sequence 204362 from Patent EP1572962.
JD396326 - Sequence 377350 from Patent EP1572962.
HQ447924 - Synthetic construct Homo sapiens clone IMAGE:100071283; CCSB003378_01 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 (SLC25A23) gene, encodes complete protein.
KJ903148 - Synthetic construct Homo sapiens clone ccsbBroadEn_12542 SLC25A23 gene, encodes complete protein.
AJ619962 - Homo sapiens partial mRNA for mitochondrial ATP-Mg/Pi carrier isoform 2, (SLC25A23 gene).
AY750170 - Homo sapiens mitochondrial Ca2+-dependent solute carrier protein 2 (SLC25A23) mRNA, complete cds; nuclear gene for mitochondrial product.
AK074579 - Homo sapiens cDNA FLJ90098 fis, clone HEMBA1005945, weakly similar to Oryctolagus cuniculus peroxisomal Ca-dependent solute carrier mRNA.
AK054901 - Homo sapiens cDNA FLJ30339 fis, clone BRACE2007401, moderately similar to Oryctolagus cuniculus peroxisomal Ca-dependent solute carrier mRNA.
AK295484 - Homo sapiens cDNA FLJ52955 complete cds, moderately similar to Homo sapiens solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 (SLC25A24), transcript variant 2, mRNA.
AK294514 - Homo sapiens cDNA FLJ56019 complete cds, highly similar to Homo sapiens solute carrier family 25, member 23 (SLC25A23), mRNA.
AJ619988 - Homo sapiens mRNA for small calcium-binding mitochondrial carrier 3 (SCAMC-3 gene).
AJ512835 - Homo sapiens mRNA for putative calcium binding transporter (ORF1).

-  Other Names for This Gene
  Alternate Gene Symbols: BC001656, ENST00000595810.1, ENST00000595810.2, ENST00000595810.3, ENST00000595810.4, M0R2I4, uc002meu.1, uc002meu.2, uc002meu.3, uc002meu.4
UCSC ID: ENST00000595810.5
RefSeq Accession: NM_024103

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.