Human Gene CEACAM21 (ENST00000407170.6) from GENCODE V44
  Description: Homo sapiens CEA cell adhesion molecule 21 (CEACAM21), transcript variant 4, mRNA. (from RefSeq NM_001290113)
Gencode Transcript: ENST00000407170.6
Gencode Gene: ENSG00000007129.18
Transcript (Including UTRs)
   Position: hg38 chr19:41,549,518-41,586,843 Size: 37,326 Total Exon Count: 8 Strand: +
Coding Region
   Position: hg38 chr19:41,579,313-41,585,871 Size: 6,559 Coding Exon Count: 4 

Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:41,549,518-41,586,843)mRNA (may differ from genome)Protein (165 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCLynxMGIOMIMPubMedUniProtKB
BioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.05 RPKM in Whole Blood
Total median expression: 41.05 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -275.10813-0.338 Picture PostScript Text
3' UTR -162.40380-0.427 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  AX775927 - Sequence 197 from Patent WO03048202.
AK023602 - Homo sapiens cDNA FLJ13540 fis, clone PLACE1006754, weakly similar to BILIARY GLYCOPROTEIN 1 PRECURSOR.
BC012001 - Homo sapiens carcinoembryonic antigen-related cell adhesion molecule 21, mRNA (cDNA clone MGC:21758 IMAGE:4540619), complete cds.
AY358084 - Homo sapiens clone DNA119477 CEACAM3 (UNQ3098) mRNA, complete cds.
BC106727 - Homo sapiens carcinoembryonic antigen-related cell adhesion molecule 21, mRNA (cDNA clone MGC:119874 IMAGE:40015070), complete cds.
KJ895115 - Synthetic construct Homo sapiens clone ccsbBroadEn_04509 CEACAM21 gene, encodes complete protein.
KJ904938 - Synthetic construct Homo sapiens clone ccsbBroadEn_14332 CEACAM21 gene, encodes complete protein.
CU680160 - Synthetic construct Homo sapiens gateway clone IMAGE:100020624 5' read CEACAM21 mRNA.
JD437338 - Sequence 418362 from Patent EP1572962.
JD190051 - Sequence 171075 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0B4J1W4, ENST00000407170.1, ENST00000407170.2, ENST00000407170.3, ENST00000407170.4, ENST00000407170.5, NM_001290113, uc002orc.1, uc002orc.2, uc002orc.3
UCSC ID: ENST00000407170.6
RefSeq Accession: NM_001288773
CCDS: CCDS74373.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.