Human Gene WIPF1 (ENST00000409415.7) from GENCODE V44
  Description: Homo sapiens WAS/WASL interacting protein family member 1 (WIPF1), transcript variant 9, mRNA. (from RefSeq NM_001375838)
RefSeq Summary (NM_001375836): This gene encodes a protein that plays an important role in the organization of the actin cytoskeleton. The encoded protein binds to a region of Wiskott-Aldrich syndrome protein that is frequently mutated in Wiskott-Aldrich syndrome, an X-linked recessive disorder. Impairment of the interaction between these two proteins may contribute to the disease. Two transcript variants encoding the same protein have been identified for this gene. [provided by RefSeq, Jul 2008].
Gencode Transcript: ENST00000409415.7
Gencode Gene: ENSG00000115935.19
Transcript (Including UTRs)
   Position: hg38 chr2:174,571,169-174,682,871 Size: 111,703 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg38 chr2:174,571,593-174,585,573 Size: 13,981 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:174,571,169-174,682,871)mRNA (may differ from genome)Protein (403 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCLynxMalacardsMGIOMIMPubMed
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: E9PB87_HUMAN
DESCRIPTION: SubName: Full=WAS/WASL-interacting protein family member 1;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: WIPF1
Diseases sorted by gene-association score: wiskott-aldrich syndrome 2* (1069), wiskott-aldrich syndrome* (298), chronic purulent otitis media (9), suppurative otitis media (6)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 39.89 RPKM in Whole Blood
Total median expression: 397.43 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -52.00136-0.382 Picture PostScript Text
3' UTR -116.20424-0.274 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003124 - WH2_dom

Pfam Domains:
PF02205 - WH2 motif

ModBase Predicted Comparative 3D Structure on E9PB87
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003779 actin binding

Biological Process:
GO:0008154 actin polymerization or depolymerization

Cellular Component:
GO:0015629 actin cytoskeleton


-  Descriptions from all associated GenBank mRNAs
  BX640870 - Homo sapiens mRNA; cDNA DKFZp686C0672 (from clone DKFZp686C0672); complete cds.
AK301271 - Homo sapiens cDNA FLJ56555 complete cds, highly similar to Wiskott-Aldrich syndrome protein-interacting protein.
BC002914 - Homo sapiens WAS/WASL interacting protein family, member 1, mRNA (cDNA clone MGC:10429 IMAGE:3954968), complete cds.
AF031588 - Homo sapiens WASP interacting protein (WIP) mRNA, partial cds.
HM005539 - Homo sapiens clone HTL-T-226 testicular tissue protein Li 226 mRNA, complete cds.
X86019 - H.sapiens mRNA for PRPL-2 protein.
BC110288 - Homo sapiens WAS/WASL interacting protein family, member 1, mRNA (cDNA clone MGC:111041 IMAGE:5184105), complete cds.
AK304194 - Homo sapiens cDNA FLJ61061 complete cds, highly similar to Wiskott-Aldrich syndrome protein-interactingprotein.
EU832147 - Synthetic construct Homo sapiens clone HAIB:100067176; DKFZo008F0125 WAS/WASL interacting protein family, member 1 protein (WIPF1) gene, encodes complete protein.
EU832240 - Synthetic construct Homo sapiens clone HAIB:100067269; DKFZo004F0126 WAS/WASL interacting protein family, member 1 protein (WIPF1) gene, encodes complete protein.
AF106062 - Homo sapiens Wiskott-Aldrich syndrome protein interacting protein (WASPIP) mRNA, partial cds.

-  Other Names for This Gene
  Alternate Gene Symbols: E9PB87, E9PB87_HUMAN, ENST00000409415.1, ENST00000409415.2, ENST00000409415.3, ENST00000409415.4, ENST00000409415.5, ENST00000409415.6, NM_001375838, uc002ujc.1, uc002ujc.2
UCSC ID: ENST00000409415.7
RefSeq Accession: NM_001375836
Protein: E9PB87

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.