Human Gene TM9SF4 (ENST00000217315.9) from GENCODE V44
Description: Homo sapiens transmembrane 9 superfamily member 4 (TM9SF4), transcript variant 2, mRNA. (from RefSeq NM_001363731)
Gencode Transcript: ENST00000217315.9
Gencode Gene: ENSG00000101337.16
Transcript (Including UTRs)
Position: hg38 chr20:32,109,736-32,167,258 Size: 57,523 Total Exon Count: 18 Strand: +
Coding Region
Position: hg38 chr20:32,133,049-32,165,444 Size: 32,396 Coding Exon Count: 17
Data last updated at UCSC: 2023-08-18 00:09:47
Sequence and Links to Tools and Databases
Primer design for this transcript
MalaCards Disease Associations
MalaCards Gene Search: TM9SF4
Diseases sorted by gene-association score: melanoma (3)
Comparative Toxicogenomics Database (CTD)
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Descriptions from all associated GenBank mRNAs
AK294980 - Homo sapiens cDNA FLJ54092 complete cds, highly similar to Transmembrane 9 superfamily protein member 4.AK126534 - Homo sapiens cDNA FLJ44570 fis, clone UTERU3011063, highly similar to Transmembrane 9 superfamily protein member 4.AK302439 - Homo sapiens cDNA FLJ54711 complete cds, highly similar to Transmembrane 9 superfamily protein member 4.AK296500 - Homo sapiens cDNA FLJ53349 complete cds, highly similar to Transmembrane 9 superfamily protein member 4.BC021107 - Homo sapiens transmembrane 9 superfamily protein member 4, mRNA (cDNA clone MGC:31858 IMAGE:4896167), complete cds.D87444 - Homo sapiens mRNA for KIAA0255 gene, partial cds.JD462879 - Sequence 443903 from Patent EP1572962.JD373488 - Sequence 354512 from Patent EP1572962.JD116235 - Sequence 97259 from Patent EP1572962.JD265206 - Sequence 246230 from Patent EP1572962.JD134274 - Sequence 115298 from Patent EP1572962.JD085479 - Sequence 66503 from Patent EP1572962.JD116233 - Sequence 97257 from Patent EP1572962.JD401103 - Sequence 382127 from Patent EP1572962.JD159321 - Sequence 140345 from Patent EP1572962.JD392764 - Sequence 373788 from Patent EP1572962.JD399562 - Sequence 380586 from Patent EP1572962.JD392616 - Sequence 373640 from Patent EP1572962.JD324548 - Sequence 305572 from Patent EP1572962.JD122882 - Sequence 103906 from Patent EP1572962.BC005173 - Homo sapiens cDNA clone IMAGE:3507918, containing frame-shift errors.BC022850 - Homo sapiens transmembrane 9 superfamily protein member 4, mRNA (cDNA clone IMAGE:4098679), partial cds.AB527227 - Synthetic construct DNA, clone: pF1KA0255, Homo sapiens TM9SF4 gene for transmembrane 9 superfamily protein member 4, without stop codon, in Flexi system.AK316293 - Homo sapiens cDNA, FLJ79192 complete cds, highly similar to Transmembrane 9 superfamily protein member 4.AK124411 - Homo sapiens cDNA FLJ42420 fis, clone BLADE2002730.JD559948 - Sequence 540972 from Patent EP1572962.JD485120 - Sequence 466144 from Patent EP1572962.JD538920 - Sequence 519944 from Patent EP1572962.JD312651 - Sequence 293675 from Patent EP1572962.JD368194 - Sequence 349218 from Patent EP1572962.JD228347 - Sequence 209371 from Patent EP1572962.JD496150 - Sequence 477174 from Patent EP1572962.JD457773 - Sequence 438797 from Patent EP1572962.JD360862 - Sequence 341886 from Patent EP1572962.JD230171 - Sequence 211195 from Patent EP1572962.JD132919 - Sequence 113943 from Patent EP1572962.JD166857 - Sequence 147881 from Patent EP1572962.JD519560 - Sequence 500584 from Patent EP1572962.JD164641 - Sequence 145665 from Patent EP1572962.JD105137 - Sequence 86161 from Patent EP1572962.JD513327 - Sequence 494351 from Patent EP1572962.JD068560 - Sequence 49584 from Patent EP1572962.JD103869 - Sequence 84893 from Patent EP1572962.JD049677 - Sequence 30701 from Patent EP1572962.JD073672 - Sequence 54696 from Patent EP1572962.JD062243 - Sequence 43267 from Patent EP1572962.JD330431 - Sequence 311455 from Patent EP1572962.JD101686 - Sequence 82710 from Patent EP1572962.JD324955 - Sequence 305979 from Patent EP1572962.JD369383 - Sequence 350407 from Patent EP1572962.JD455361 - Sequence 436385 from Patent EP1572962.JD416739 - Sequence 397763 from Patent EP1572962.JD190290 - Sequence 171314 from Patent EP1572962.JD124119 - Sequence 105143 from Patent EP1572962.JD511281 - Sequence 492305 from Patent EP1572962.JD055374 - Sequence 36398 from Patent EP1572962.JD053920 - Sequence 34944 from Patent EP1572962.JD364788 - Sequence 345812 from Patent EP1572962.JD513678 - Sequence 494702 from Patent EP1572962.JD320093 - Sequence 301117 from Patent EP1572962.JD566707 - Sequence 547731 from Patent EP1572962.
Other Names for This Gene
Alternate Gene Symbols: A0A0C4DFM1, ENST00000217315.1, ENST00000217315.2, ENST00000217315.3, ENST00000217315.4, ENST00000217315.5, ENST00000217315.6, ENST00000217315.7, ENST00000217315.8, NM_001363731, uc002wxk.1, uc002wxk.2UCSC ID: ENST00000217315.9RefSeq Accession: NM_001363731
CCDS: CCDS13196.2
Methods, Credits, and Use Restrictions
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for details on how this gene model was made and data restrictions if any.