Human Gene CYP24A1 (ENST00000395955.7) from GENCODE V44
  Description: Homo sapiens cytochrome P450 family 24 subfamily A member 1 (CYP24A1), transcript variant 2, mRNA; nuclear gene for mitochondrial product. (from RefSeq NM_001128915)
RefSeq Summary (NM_001128915): This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. This mitochondrial protein initiates the degradation of 1,25-dihydroxyvitamin D3, the physiologically active form of vitamin D3, by hydroxylation of the side chain. In regulating the level of vitamin D3, this enzyme plays a role in calcium homeostasis and the vitamin D endocrine system. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008].
Gencode Transcript: ENST00000395955.7
Gencode Gene: ENSG00000019186.10
Transcript (Including UTRs)
   Position: hg38 chr20:54,153,962-54,173,649 Size: 19,688 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg38 chr20:54,157,179-54,173,579 Size: 16,401 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:54,153,962-54,173,649)mRNA (may differ from genome)Protein (448 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCLynxMalacardsMGIneXtProtOMIM
PubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CP24A_HUMAN
DESCRIPTION: RecName: Full=1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; Short=24-OHase; Short=Vitamin D(3) 24-hydroxylase; EC=1.14.13.126; AltName: Full=Cytochrome P450 24A1; AltName: Full=Cytochrome P450-CC24; Flags: Precursor;
FUNCTION: Has a role in maintaining calcium homeostasis. Catalyzes the NADPH-dependent 24-hydroxylation of calcidiol (25- hydroxyvitamin D(3)) and calcitriol (1-alpha,25-dihydroxyvitamin D(3)). The enzyme can perform up to 6 rounds of hydroxylation of calcitriol leading to calcitroic acid. It also shows 23- hydroxylating activity leading to 1-alpha,25-dihydroxyvitamin D(3)-26,23-lactone as end product.
CATALYTIC ACTIVITY: Calcitriol + NADPH + O(2) = calcitetrol + NADP(+) + H(2)O.
CATALYTIC ACTIVITY: Calcidiol + NADPH + O(2) = secalciferol + NADP(+) + H(2)O.
COFACTOR: Heme group (By similarity).
SUBCELLULAR LOCATION: Mitochondrion.
DISEASE: Defects in CYP24A1 are the cause of hypercalcemia infantile (HCAI) [MIM:143880]. HCAI is a disorder characterized by abnormally high level of calcium in the blood, failure to thrive, vomiting, dehydration, and nephrocalcinosis.
SIMILARITY: Belongs to the cytochrome P450 family.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CYP24A1
Diseases sorted by gene-association score: hypercalcemia, infantile, 1* (1229), hypercalcemia, infantile* (529), brody myopathy* (283), autosomal recessive infantile hypercalcemia* (247), williams-beuren syndrome* (233), nephrocalcinosis (10), osteomalacia (10), mineral metabolism disease (4), colorectal cancer (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.35 RPKM in Bladder
Total median expression: 13.91 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -6.7070-0.096 Picture PostScript Text
3' UTR -221.90810-0.274 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001128 - Cyt_P450
IPR017972 - Cyt_P450_CS
IPR002401 - Cyt_P450_E_grp-I

Pfam Domains:
PF00067 - Cytochrome P450

ModBase Predicted Comparative 3D Structure on Q07973
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004497 monooxygenase activity
GO:0005506 iron ion binding
GO:0008403 25-hydroxycholecalciferol-24-hydroxylase activity
GO:0016491 oxidoreductase activity
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 heme binding
GO:0030342 1-alpha,25-dihydroxyvitamin D3 24-hydroxylase activity
GO:0046872 metal ion binding

Biological Process:
GO:0001649 osteoblast differentiation
GO:0006766 vitamin metabolic process
GO:0033280 response to vitamin D
GO:0042359 vitamin D metabolic process
GO:0042369 vitamin D catabolic process
GO:0055114 oxidation-reduction process
GO:0070561 vitamin D receptor signaling pathway

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005739 mitochondrion
GO:0005741 mitochondrial outer membrane
GO:0005886 plasma membrane


-  Descriptions from all associated GenBank mRNAs
  L13286 - Human mitochondrial 1,25-dihydroxyvitamin D3 24-hydroxylase mRNA, complete cds.
BC109083 - Homo sapiens cytochrome P450, family 24, subfamily A, polypeptide 1, mRNA (cDNA clone MGC:126273 IMAGE:40034385), complete cds.
BC109084 - Homo sapiens cytochrome P450, family 24, subfamily A, polypeptide 1, mRNA (cDNA clone MGC:126274 IMAGE:40034387), complete cds.
JD377262 - Sequence 358286 from Patent EP1572962.
JD251782 - Sequence 232806 from Patent EP1572962.
JD298645 - Sequence 279669 from Patent EP1572962.
JD262605 - Sequence 243629 from Patent EP1572962.
JD192708 - Sequence 173732 from Patent EP1572962.
JD215950 - Sequence 196974 from Patent EP1572962.
JD313964 - Sequence 294988 from Patent EP1572962.
JD059440 - Sequence 40464 from Patent EP1572962.
JD141486 - Sequence 122510 from Patent EP1572962.
JD462233 - Sequence 443257 from Patent EP1572962.
JD310569 - Sequence 291593 from Patent EP1572962.
JD108279 - Sequence 89303 from Patent EP1572962.
AY858838 - Homo sapiens vitamin D 24-hydroxylase splice variant (CYP24) mRNA, complete cds, alternatively spliced.
S67623 - 25-hydroxyvitamin D 24-hydroxylase cytochrome P450 subunit {3' region} [human, kidney, mRNA Partial, 776 nt].
KJ891021 - Synthetic construct Homo sapiens clone ccsbBroadEn_00415 CYP24A1 gene, encodes complete protein.
JD157061 - Sequence 138085 from Patent EP1572962.
JD422977 - Sequence 404001 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_nuclearRsPathway - Nuclear Receptors in Lipid Metabolism and Toxicity

Reactome (by CSHL, EBI, and GO)

Protein Q07973 (Reactome details) participates in the following event(s):

R-HSA-209765 CYP24A1 hydroxylates 1,25(OH)2D, inactivating it
R-HSA-211950 CYP24A1 24-hydroxylates CTL
R-HSA-196791 Vitamin D (calciferol) metabolism
R-HSA-211916 Vitamins
R-HSA-209943 Steroid hormones
R-HSA-8957322 Metabolism of steroids
R-HSA-211897 Cytochrome P450 - arranged by substrate type
R-HSA-556833 Metabolism of lipids
R-HSA-211945 Phase I - Functionalization of compounds
R-HSA-1430728 Metabolism
R-HSA-211859 Biological oxidations

-  Other Names for This Gene
  Alternate Gene Symbols: CP24A_HUMAN, CYP24, ENST00000395955.1, ENST00000395955.2, ENST00000395955.3, ENST00000395955.4, ENST00000395955.5, ENST00000395955.6, NM_001128915, Q07973, Q15807, Q32ML3, uc002xww.1, uc002xww.2, uc002xww.3
UCSC ID: ENST00000395955.7
RefSeq Accession: NM_001128915
Protein: Q07973 (aka CP24A_HUMAN)
CCDS: CCDS46616.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.