Human Gene TTC28-AS1 (ENST00000437713.7) from GENCODE V44
  Description: Homo sapiens TTC28 antisense RNA 1 (TTC28-AS1), transcript variant 2, long non-coding RNA. (from RefSeq NR_026962)
Gencode Transcript: ENST00000437713.7
Gencode Gene: ENSG00000235954.9
Transcript (Including UTRs)
   Position: hg38 chr22:27,919,404-27,924,963 Size: 5,560 Total Exon Count: 3 Strand: +


Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionOther Species
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:27,919,404-27,924,963)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
Entrez GeneExonPrimerGencodeHGNCPubMedBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.10 RPKM in Ovary
Total median expression: 120.96 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC060374 - Homo sapiens cDNA clone IMAGE:5192449, partial cds.
AL832597 - Homo sapiens mRNA; cDNA DKFZp451P1316 (from clone DKFZp451P1316).
BC016779 - Homo sapiens cDNA clone IMAGE:4106359.
BC028176 - Homo sapiens cDNA clone IMAGE:5406928, partial cds.
BC015967 - Homo sapiens cDNA clone IMAGE:4069197.
DQ577574 - Homo sapiens piRNA piR-45686, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000437713.1, ENST00000437713.2, ENST00000437713.3, ENST00000437713.4, ENST00000437713.5, ENST00000437713.6, NR_026962, uc003adn.1, uc003adn.2, uc003adn.3, uc003adn.4, uc003adn.5, uc003adn.6
UCSC ID: ENST00000437713.7
RefSeq Accession: NR_026962

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.