Human Gene IL6ST-DT (ENST00000500093.2) from GENCODE V44
  Description: Homo sapiens uncharacterized LOC441072 (FLJ31104), long non-coding RNA. (from RefSeq NR_102755)
Gencode Transcript: ENST00000500093.2
Gencode Gene: ENSG00000227908.5
Transcript (Including UTRs)
   Position: hg38 chr5:55,995,167-56,003,649 Size: 8,483 Total Exon Count: 2 Strand: +


Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:55,995,167-56,003,649)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
Entrez GeneExonPrimerGencodeLynxPubMedBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.41 RPKM in Testis
Total median expression: 10.12 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  LF209912 - JP 2014500723-A/17415: Polycomb-Associated Non-Coding RNAs.
MA445489 - JP 2018138019-A/17415: Polycomb-Associated Non-Coding RNAs.
BC039324 - Homo sapiens cDNA clone IMAGE:5267076.
AK055666 - Homo sapiens cDNA FLJ31104 fis, clone IMR322000107.
JD222935 - Sequence 203959 from Patent EP1572962.
JD497842 - Sequence 478866 from Patent EP1572962.
JD140149 - Sequence 121173 from Patent EP1572962.
JD144686 - Sequence 125710 from Patent EP1572962.
JD543374 - Sequence 524398 from Patent EP1572962.
JD543375 - Sequence 524399 from Patent EP1572962.
JD543376 - Sequence 524400 from Patent EP1572962.
JD478654 - Sequence 459678 from Patent EP1572962.
JD478655 - Sequence 459679 from Patent EP1572962.
JD463902 - Sequence 444926 from Patent EP1572962.
JD148386 - Sequence 129410 from Patent EP1572962.
JD249985 - Sequence 231009 from Patent EP1572962.
JD249987 - Sequence 231011 from Patent EP1572962.
JD249986 - Sequence 231010 from Patent EP1572962.
JD324817 - Sequence 305841 from Patent EP1572962.
JD149488 - Sequence 130512 from Patent EP1572962.
JD518092 - Sequence 499116 from Patent EP1572962.
JD117314 - Sequence 98338 from Patent EP1572962.
JD106074 - Sequence 87098 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000500093.1, NR_102755, uc003jqs.1, uc003jqs.2, uc003jqs.3, uc003jqs.4
UCSC ID: ENST00000500093.2
RefSeq Accession: NR_102755

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.