Human Gene ALDH7A1 (ENST00000409134.8) from GENCODE V49
  Description: aldehyde dehydrogenase 7 family member A1, transcript variant 1 (from RefSeq NM_001201377.2)
Gencode Transcript: ENST00000409134.8
Gencode Gene: ENSG00000164904.19
Transcript (Including UTRs)
   Position: hg38 chr5:126,541,841-126,595,219 Size: 53,379 Total Exon Count: 18 Strand: -
Coding Region
   Position: hg38 chr5:126,544,965-126,595,198 Size: 50,234 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesGeneReviewsMethods
Data last updated at UCSC: 2025-09-17 13:57:07

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:126,541,841-126,595,219)mRNA (may differ from genome)Protein (539 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCLynxMalacardsMGImyGene2OMIM
PubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: AL7A1_HUMAN
DESCRIPTION: RecName: Full=Alpha-aminoadipic semialdehyde dehydrogenase; Short=Alpha-AASA dehydrogenase; EC=1.2.1.31; AltName: Full=Aldehyde dehydrogenase family 7 member A1; EC=1.2.1.3; AltName: Full=Antiquitin-1; AltName: Full=Betaine aldehyde dehydrogenase; EC=1.2.1.8; AltName: Full=Delta1-piperideine-6-carboxylate dehydrogenase; Short=P6c dehydrogenase; Flags: Precursor;
FUNCTION: Multifunctional enzyme mediating important protective effects. Metabolizes betaine aldehyde to betaine, an important cellular osmolyte and methyl donor. Protects cells from oxidative stress by metabolizing a number of lipid peroxidation-derived aldehydes. Involved in lysine catabolism.
CATALYTIC ACTIVITY: (S)-2-amino-6-oxohexanoate + NAD(P)(+) + H(2)O = L-2-aminoadipate + NAD(P)H.
CATALYTIC ACTIVITY: Betaine aldehyde + NAD(+) + H(2)O = betaine + NADH.
CATALYTIC ACTIVITY: An aldehyde + NAD(+) + H(2)O = a carboxylate + NADH.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=28.5 uM for nonanal; KM=5.3 uM for trans-2-nonenal; KM=39.1 uM for hexanal; KM=17.5 uM for octanal; KM=41.1 uM for betaine aldehyde; KM=169 uM for L-2-aminoadipate 6-semialdehyde; KM=530.2 uM for benzaldehyde; KM=647.4 uM for propanal; KM=7374.3 uM for glyceraldehyde; Vmax=364.9 nmol/min/mg enzyme toward nonanal; Vmax=34.9 nmol/min/mg enzyme toward trans-2-nonenal; Vmax=243.3 nmol/min/mg enzyme toward hexanal; Vmax=72.3 nmol/min/mg enzyme toward octanal; Vmax=101.4 nmol/min/mg enzyme toward betaine aldehyde; Vmax=276.2 nmol/min/mg enzyme toward L-2-aminoadipate 6- semialdehyde; Vmax=125.2 nmol/min/mg enzyme toward benzaldehyde; Vmax=69.9 nmol/min/mg enzyme toward propanal; Vmax=174 nmol/min/mg enzyme toward glyceraldehyde;
PATHWAY: Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine from betaine aldehyde: step 1/1.
SUBUNIT: Homotetramer (By similarity).
INTERACTION: Q12929:EPS8; NbExp=2; IntAct=EBI-726842, EBI-375576;
SUBCELLULAR LOCATION: Mitochondrion. Nucleus.
SUBCELLULAR LOCATION: Isoform 2: Cytoplasm, cytosol.
TISSUE SPECIFICITY: Abundant in hepatoma cells and fetal cochlea, ovary, eye, heart, adrenal gland, liver and kidney. Low levels present in adult peripheral blood leukocytes and fetal brain, thymus, spleen, skeletal muscle, lung and tongue.
DISEASE: Defects in ALDH7A1 are the cause of pyridoxine-dependent epilepsy (PDE) [MIM:266100]. PDE is characterized by a combination of various seizure types. It usually occurs in the first hours of life and is unresponsive to standard anticonvulsants, responding only to immediate administration of pyridoxine hydrochloride.
SIMILARITY: Belongs to the aldehyde dehydrogenase family.
SEQUENCE CAUTION: Sequence=AAC51935.1; Type=Frameshift; Positions=233, 268; Sequence=AAH02515.3; Type=Erroneous initiation; Sequence=AAH71712.1; Type=Erroneous initiation; Sequence=AAH73174.1; Type=Erroneous initiation; Sequence=BAG35366.1; Type=Erroneous initiation;
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/ALDH7A1";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ALDH7A1
Diseases sorted by gene-association score: epilepsy, pyridoxine-dependent* (1668), hydrocephalus* (233), hydrocephalus, nonsyndromic, autosomal recessive 2* (231), hydrocephalus, nonsyndromic, autosomal recessive* (231), visual epilepsy* (82), seizure disorder* (78), folinic acid-responsive seizures (18), mucinous stomach adenocarcinoma (15), eccrine adenocarcinoma (15), cortical blindness (11), sexual disorder (10), homocarnosinosis (9), null-cell leukemia (9), epilepsy (8), vasculogenic impotence (7), jejunoileitis (7), paget disease, extramammary (7), retinitis pigmentosa 19 (7), corneal dystrophy, reis-bucklers type (5), impotence (5), low compliance bladder (5), transient global amnesia (4), retinitis pigmentosa 26 (4), acrodysostosis (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 30.64 RPKM in Brain - Amygdala
Total median expression: 550.24 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -5.3021-0.252 Picture PostScript Text
3' UTR -1074.003124-0.344 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016161 - Ald_DH/histidinol_DH
IPR016163 - Ald_DH_C
IPR016160 - Ald_DH_CS
IPR016162 - Ald_DH_N
IPR015590 - Aldehyde_DH_dom

Pfam Domains:
PF00171 - Aldehyde dehydrogenase family

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2J6L - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P49419
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserGenome BrowserNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsemblEnsembl  
Protein SequenceProtein SequenceProtein SequenceProtein Sequence  
AlignmentAlignmentAlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004029 aldehyde dehydrogenase (NAD) activity
GO:0004043 L-aminoadipate-semialdehyde dehydrogenase activity
GO:0005515 protein binding
GO:0008802 betaine-aldehyde dehydrogenase activity
GO:0016491 oxidoreductase activity
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Biological Process:
GO:0006081 cellular aldehyde metabolic process
GO:0006554 lysine catabolic process
GO:0007605 sensory perception of sound
GO:0008152 metabolic process
GO:0019285 glycine betaine biosynthetic process from choline
GO:0042426 choline catabolic process
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005759 mitochondrial matrix
GO:0005829 cytosol
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AK123774 - Homo sapiens cDNA FLJ41780 fis, clone IMR322017049.
CR933637 - Homo sapiens mRNA; cDNA DKFZp686D0338 (from clone DKFZp686D0338).
AK021800 - Homo sapiens cDNA FLJ11738 fis, clone HEMBA1005474.
JD238444 - Sequence 219468 from Patent EP1572962.
JD135896 - Sequence 116920 from Patent EP1572962.
JD378234 - Sequence 359258 from Patent EP1572962.
JD543963 - Sequence 524987 from Patent EP1572962.
JD140160 - Sequence 121184 from Patent EP1572962.
JD543962 - Sequence 524986 from Patent EP1572962.
JD498025 - Sequence 479049 from Patent EP1572962.
JD196143 - Sequence 177167 from Patent EP1572962.
AK297365 - Homo sapiens cDNA FLJ56008 complete cds, highly similar to Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3).
AK295526 - Homo sapiens cDNA FLJ55975 complete cds, highly similar to Aldehyde dehydrogenase family 7 member A1 (EC 1.2.1.3).
S74728 - antiquitin=26g turgor protein homolog [human, kidney, mRNA, 1809 nt].
BC073174 - Homo sapiens aldehyde dehydrogenase 7 family, member A1, mRNA (cDNA clone MGC:90324 IMAGE:6501646), complete cds.
BC071712 - Homo sapiens aldehyde dehydrogenase 7 family, member A1, mRNA (cDNA clone MGC:88005 IMAGE:5518212), complete cds.
AK092507 - Homo sapiens cDNA FLJ35188 fis, clone PLACE6016093, highly similar to ANTIQUITIN (EC 1.2.1.-).
BC002515 - Homo sapiens aldehyde dehydrogenase 7 family, member A1, mRNA (cDNA clone MGC:1569 IMAGE:3139235), complete cds.
GQ900979 - Homo sapiens clone HEL-T-91 epididymis secretory sperm binding protein mRNA, complete cds.
JD362875 - Sequence 343899 from Patent EP1572962.
AK312459 - Homo sapiens cDNA, FLJ92814, Homo sapiens aldehyde dehydrogenase 7 family, member A1 (ALDH7A1),mRNA.
EU831757 - Synthetic construct Homo sapiens clone HAIB:100066786; DKFZo008B0121 aldehyde dehydrogenase 7 family, member A1 protein (ALDH7A1) gene, encodes complete protein.
EU831835 - Synthetic construct Homo sapiens clone HAIB:100066864; DKFZo004B0122 aldehyde dehydrogenase 7 family, member A1 protein (ALDH7A1) gene, encodes complete protein.
AB489160 - Synthetic construct DNA, clone: pF1KB5155, Homo sapiens ALDH7A1 gene for aldehyde dehydrogenase 7 family, member A1, without stop codon, in Flexi system.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa00010 - Glycolysis / Gluconeogenesis
hsa00053 - Ascorbate and aldarate metabolism
hsa00071 - Fatty acid metabolism
hsa00280 - Valine, leucine and isoleucine degradation
hsa00310 - Lysine degradation
hsa00330 - Arginine and proline metabolism
hsa00340 - Histidine metabolism
hsa00380 - Tryptophan metabolism
hsa00410 - beta-Alanine metabolism
hsa00561 - Glycerolipid metabolism
hsa00620 - Pyruvate metabolism
hsa00640 - Propanoate metabolism
hsa00650 - Butanoate metabolism
hsa00903 - Limonene and pinene degradation
hsa01100 - Metabolic pathways

BioCyc Knowledge Library
CHOLINE-BETAINE-ANA-PWY - choline degradation
LYSINE-DEG1-PWY - L-lysine degradation (saccharopine pathway)
PWY66-414 - superpathway of choline degradation to L-serine
PWY66-425 - L-lysine degradation (pipecolate pathway)

Reactome (by CSHL, EBI, and GO)

Protein P49419 (Reactome details) participates in the following event(s):

R-HSA-6797955 ALDH7A1 oxidises BETALD to BET
R-HSA-70941 alpha-aminoadipoate semialdehyde + NAD+ => alpha-aminoadipate + NADH + H+
R-HSA-6798163 Choline catabolism
R-HSA-71064 Lysine catabolism
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-6788656 Histidine, lysine, phenylalanine, tyrosine, proline and tryptophan catabolism
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: AL7A1_HUMAN, ALDH7A1 , ATQ1, B2R669, B4DIC7, B4DMA0, E7EPT3, ENST00000409134.1, ENST00000409134.2, ENST00000409134.3, ENST00000409134.4, ENST00000409134.5, ENST00000409134.6, ENST00000409134.7, NM_001201377, O14619, P49419, Q6IPU8, Q9BUL4, uc003ktx.1, uc003ktx.2, uc003ktx.3, uc003ktx.4, uc003ktx.5, uc003ktx.6
UCSC ID: ENST00000409134.8
RefSeq Accession: NM_001201377.2
Protein: P49419 (aka AL7A1_HUMAN or D7A1_HUMAN)
CCDS: CCDS4137.2

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene ALDH7A1:
pds (Pyridoxine-Dependent Epilepsy - ALDH7A1)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.