Human Gene CCDC69 (ENST00000355417.7) from GENCODE V44
  Description: Homo sapiens coiled-coil domain containing 69 (CCDC69), mRNA. (from RefSeq NM_015621)
Gencode Transcript: ENST00000355417.7
Gencode Gene: ENSG00000198624.13
Transcript (Including UTRs)
   Position: hg38 chr5:151,181,052-151,224,092 Size: 43,041 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg38 chr5:151,183,437-151,223,970 Size: 40,534 Coding Exon Count: 9 

Page IndexSequence and LinksPrimersCTDRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Methods
Data last updated at UCSC: 2023-08-18 00:09:47

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:151,181,052-151,224,092)mRNA (may differ from genome)Protein (296 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGencodeGeneCards
HGNCHPRDLynxMGIneXtProtPubMed
UniProtKBBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 112.79 RPKM in Colon - Sigmoid
Total median expression: 1337.18 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -82.10122-0.673 Picture PostScript Text
3' UTR -883.302385-0.370 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on A6NI79
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGDEnsembl   
Protein SequenceProtein SequenceProtein Sequence   
AlignmentAlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0051255 spindle midzone assembly

Cellular Component:
GO:0005737 cytoplasm
GO:0005819 spindle
GO:0005856 cytoskeleton
GO:0030496 midbody
GO:0051233 spindle midzone


-  Descriptions from all associated GenBank mRNAs
  AL080169 - Homo sapiens mRNA; cDNA DKFZp434C171 (from clone DKFZp434C171); partial cds.
AK225826 - Homo sapiens mRNA for hypothetical protein LOC26112 variant, clone: FCC128B05.
AL713742 - Homo sapiens mRNA; cDNA DKFZp761F0621 (from clone DKFZp761F0621).
AK094658 - Homo sapiens cDNA FLJ37339 fis, clone BRAMY2020520.
AK023767 - Homo sapiens cDNA FLJ13705 fis, clone PLACE2000302.
JD517150 - Sequence 498174 from Patent EP1572962.
JD366185 - Sequence 347209 from Patent EP1572962.
JD452586 - Sequence 433610 from Patent EP1572962.
JD517149 - Sequence 498173 from Patent EP1572962.
JD189762 - Sequence 170786 from Patent EP1572962.
JD405174 - Sequence 386198 from Patent EP1572962.
JD149213 - Sequence 130237 from Patent EP1572962.
JD149214 - Sequence 130238 from Patent EP1572962.
JD189763 - Sequence 170787 from Patent EP1572962.
JD057121 - Sequence 38145 from Patent EP1572962.
JD405175 - Sequence 386199 from Patent EP1572962.
JD461264 - Sequence 442288 from Patent EP1572962.
JD452585 - Sequence 433609 from Patent EP1572962.
JD100388 - Sequence 81412 from Patent EP1572962.
JD406675 - Sequence 387699 from Patent EP1572962.
JD116498 - Sequence 97522 from Patent EP1572962.
JD523346 - Sequence 504370 from Patent EP1572962.
JD318771 - Sequence 299795 from Patent EP1572962.
JD351678 - Sequence 332702 from Patent EP1572962.
JD370591 - Sequence 351615 from Patent EP1572962.
JD243151 - Sequence 224175 from Patent EP1572962.
JD478259 - Sequence 459283 from Patent EP1572962.
JD223145 - Sequence 204169 from Patent EP1572962.
JD194834 - Sequence 175858 from Patent EP1572962.
JD194833 - Sequence 175857 from Patent EP1572962.
BC016647 - Homo sapiens coiled-coil domain containing 69, mRNA (cDNA clone IMAGE:4342371), partial cds.
JD128122 - Sequence 109146 from Patent EP1572962.
JD458149 - Sequence 439173 from Patent EP1572962.
JD434859 - Sequence 415883 from Patent EP1572962.
BC013053 - Homo sapiens coiled-coil domain containing 69, mRNA (cDNA clone IMAGE:3881233), **** WARNING: chimeric clone ****.
JD479620 - Sequence 460644 from Patent EP1572962.
JD524464 - Sequence 505488 from Patent EP1572962.
JD397341 - Sequence 378365 from Patent EP1572962.
JD397340 - Sequence 378364 from Patent EP1572962.
JD337124 - Sequence 318148 from Patent EP1572962.
JD053021 - Sequence 34045 from Patent EP1572962.
JD268325 - Sequence 249349 from Patent EP1572962.
JD242186 - Sequence 223210 from Patent EP1572962.
JD197340 - Sequence 178364 from Patent EP1572962.
JD496069 - Sequence 477093 from Patent EP1572962.
JD485267 - Sequence 466291 from Patent EP1572962.
JD265473 - Sequence 246497 from Patent EP1572962.
JD428658 - Sequence 409682 from Patent EP1572962.
JD382365 - Sequence 363389 from Patent EP1572962.
JD509707 - Sequence 490731 from Patent EP1572962.
JD146714 - Sequence 127738 from Patent EP1572962.
JD113562 - Sequence 94586 from Patent EP1572962.
JD359724 - Sequence 340748 from Patent EP1572962.
JD168833 - Sequence 149857 from Patent EP1572962.
JD118914 - Sequence 99938 from Patent EP1572962.
JD467964 - Sequence 448988 from Patent EP1572962.
JD217276 - Sequence 198300 from Patent EP1572962.
JD253693 - Sequence 234717 from Patent EP1572962.
JD206907 - Sequence 187931 from Patent EP1572962.
JD045702 - Sequence 26726 from Patent EP1572962.
JD389030 - Sequence 370054 from Patent EP1572962.
JD137561 - Sequence 118585 from Patent EP1572962.
JD454260 - Sequence 435284 from Patent EP1572962.
AK298063 - Homo sapiens cDNA FLJ58029 complete cds.
JD170023 - Sequence 151047 from Patent EP1572962.
JD414323 - Sequence 395347 from Patent EP1572962.
JD318679 - Sequence 299703 from Patent EP1572962.
JD044930 - Sequence 25954 from Patent EP1572962.
JD224960 - Sequence 205984 from Patent EP1572962.
JD036884 - Sequence 17908 from Patent EP1572962.
JD109281 - Sequence 90305 from Patent EP1572962.
JD360998 - Sequence 342022 from Patent EP1572962.
JD393219 - Sequence 374243 from Patent EP1572962.
JD429673 - Sequence 410697 from Patent EP1572962.
AK292841 - Homo sapiens cDNA FLJ76473 complete cds.
AY538626 - Homo sapiens chromosome 5 unknown mRNA.
KJ902417 - Synthetic construct Homo sapiens clone ccsbBroadEn_11811 CCDC69 gene, encodes complete protein.
JD356798 - Sequence 337822 from Patent EP1572962.
JD052148 - Sequence 33172 from Patent EP1572962.
JD214008 - Sequence 195032 from Patent EP1572962.
JD264538 - Sequence 245562 from Patent EP1572962.
JD316827 - Sequence 297851 from Patent EP1572962.
JD372907 - Sequence 353931 from Patent EP1572962.
JD336666 - Sequence 317690 from Patent EP1572962.
JD087488 - Sequence 68512 from Patent EP1572962.
JD094844 - Sequence 75868 from Patent EP1572962.
JD040855 - Sequence 21879 from Patent EP1572962.
JD509163 - Sequence 490187 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A6NI79, A8K9X6, CCD69_HUMAN, ENST00000355417.1, ENST00000355417.2, ENST00000355417.3, ENST00000355417.4, ENST00000355417.5, ENST00000355417.6, NM_015621, uc003ltq.1, uc003ltq.2, uc003ltq.3, uc003ltq.4, uc003ltq.5
UCSC ID: ENST00000355417.7
RefSeq Accession: NM_015621
Protein: A6NI79 (aka CCD69_HUMAN)
CCDS: CCDS4312.1

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.